miRNA display CGI


Results 21 - 40 of 362 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26420 5' -61.6 NC_005345.2 + 4047 0.73 0.128729
Target:  5'- aCGGCGCCgACGAgCGCCGacaCGGUAuGCc -3'
miRNA:   3'- aGUCGUGG-UGCUgGCGGCg--GCCGU-CG- -5'
26420 5' -61.6 NC_005345.2 + 4178 0.66 0.346587
Target:  5'- -aGGCGCUcacgggGCGGCagGCCGUgcaGGCGGCg -3'
miRNA:   3'- agUCGUGG------UGCUGg-CGGCGg--CCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 4275 0.69 0.229188
Target:  5'- gCuGCGCCucGCGACgCgGCCGCCGcGgGGCg -3'
miRNA:   3'- aGuCGUGG--UGCUG-G-CGGCGGC-CgUCG- -5'
26420 5' -61.6 NC_005345.2 + 4782 0.72 0.13954
Target:  5'- cCGGCgACCcguucgaggugACGAUCGCCccCCGGCAGCu -3'
miRNA:   3'- aGUCG-UGG-----------UGCUGGCGGc-GGCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 4885 0.68 0.286572
Target:  5'- cCGGCGCCgcuGCGAgucgaugcUCGCCGagcugcugCGGCAGCc -3'
miRNA:   3'- aGUCGUGG---UGCU--------GGCGGCg-------GCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 4977 0.67 0.303673
Target:  5'- --cGCACUGCGACCucggugggaggaacuGaCCGCCgacgaGGCGGCg -3'
miRNA:   3'- aguCGUGGUGCUGG---------------C-GGCGG-----CCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 5054 0.66 0.362932
Target:  5'- -aGGCugCA-GACCGCUGUgaGCAGCu -3'
miRNA:   3'- agUCGugGUgCUGGCGGCGgcCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 5158 0.68 0.26431
Target:  5'- --cGCGCCgcgGCGGCCgacgagucgggcgaGCCGCCgGGCuGCa -3'
miRNA:   3'- aguCGUGG---UGCUGG--------------CGGCGG-CCGuCG- -5'
26420 5' -61.6 NC_005345.2 + 5219 0.68 0.286572
Target:  5'- cCGGCGCUACa--CGCCGUCgGGguGCc -3'
miRNA:   3'- aGUCGUGGUGcugGCGGCGG-CCguCG- -5'
26420 5' -61.6 NC_005345.2 + 5246 0.69 0.217832
Target:  5'- --cGCGCUGCGcGCCGCCGUgGcgauGCAGCg -3'
miRNA:   3'- aguCGUGGUGC-UGGCGGCGgC----CGUCG- -5'
26420 5' -61.6 NC_005345.2 + 5443 0.66 0.379803
Target:  5'- gCGGCGCC-CGGguCgGCCGUaggGGCGGUg -3'
miRNA:   3'- aGUCGUGGuGCU--GgCGGCGg--CCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 5460 0.66 0.349813
Target:  5'- cCGGC-CCACGcggcgaggcugaucaGCCacCCGgCGGCGGCa -3'
miRNA:   3'- aGUCGuGGUGC---------------UGGc-GGCgGCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 5521 0.7 0.196561
Target:  5'- ---cUACCGCGACC-CCGCCGGgGGg -3'
miRNA:   3'- agucGUGGUGCUGGcGGCGGCCgUCg -5'
26420 5' -61.6 NC_005345.2 + 5640 0.72 0.13954
Target:  5'- -gAGCGCCGgGuuCGCCGCgaccuUGGCGGCg -3'
miRNA:   3'- agUCGUGGUgCugGCGGCG-----GCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 5651 0.71 0.181819
Target:  5'- aUCGGCACCGCccggcgggcccgGACCgaGCCGaCCGcGCuGCg -3'
miRNA:   3'- -AGUCGUGGUG------------CUGG--CGGC-GGC-CGuCG- -5'
26420 5' -61.6 NC_005345.2 + 6106 0.68 0.293604
Target:  5'- cCGGCACCGCGAgUGCacCGUaCGGC-GCu -3'
miRNA:   3'- aGUCGUGGUGCUgGCG--GCG-GCCGuCG- -5'
26420 5' -61.6 NC_005345.2 + 6231 0.68 0.253399
Target:  5'- cCuGCACCACGACgCcCCGagcgacuacCCGGCGGUu -3'
miRNA:   3'- aGuCGUGGUGCUG-GcGGC---------GGCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 6278 0.67 0.323073
Target:  5'- -gGGCGCCggGCGucACCGaCCGaaaGGCAGCc -3'
miRNA:   3'- agUCGUGG--UGC--UGGC-GGCgg-CCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 6283 0.66 0.379803
Target:  5'- aCAGCACgugCGgGGCCGCCuucaucccgGCCGGguucCGGCc -3'
miRNA:   3'- aGUCGUG---GUgCUGGCGG---------CGGCC----GUCG- -5'
26420 5' -61.6 NC_005345.2 + 6358 0.67 0.323073
Target:  5'- gCGGCGCCGgGuUgGCCGC-GGUGGCg -3'
miRNA:   3'- aGUCGUGGUgCuGgCGGCGgCCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.