miRNA display CGI


Results 1 - 20 of 362 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26420 5' -61.6 NC_005345.2 + 235 0.66 0.378947
Target:  5'- -uGGCGCCACaggcagaGACCcCCGCCGuGUaugucGGCg -3'
miRNA:   3'- agUCGUGGUG-------CUGGcGGCGGC-CG-----UCG- -5'
26420 5' -61.6 NC_005345.2 + 264 0.66 0.379803
Target:  5'- --cGCACCuuCG-CCGCCacGUCGGcCGGCg -3'
miRNA:   3'- aguCGUGGu-GCuGGCGG--CGGCC-GUCG- -5'
26420 5' -61.6 NC_005345.2 + 301 0.7 0.212336
Target:  5'- gCAGCACCGCc-CCGCCcCCcggaaggggcggGGCGGCu -3'
miRNA:   3'- aGUCGUGGUGcuGGCGGcGG------------CCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 867 0.71 0.159419
Target:  5'- aUCAGCGCgCACuGCgCGCgGUCGgGCGGCa -3'
miRNA:   3'- -AGUCGUG-GUGcUG-GCGgCGGC-CGUCG- -5'
26420 5' -61.6 NC_005345.2 + 1124 0.67 0.30077
Target:  5'- gCGGC-CCAguuCGACCGCUuccgGuuGGCGGUc -3'
miRNA:   3'- aGUCGuGGU---GCUGGCGG----CggCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 1180 0.66 0.371302
Target:  5'- gCGGCGCaCACGG--GCgGCuCGGCAGUc -3'
miRNA:   3'- aGUCGUG-GUGCUggCGgCG-GCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 1206 0.66 0.371302
Target:  5'- cCGGC-CCGCGGgccaCGCCGCgCGGUacgggucccauGGCu -3'
miRNA:   3'- aGUCGuGGUGCUg---GCGGCG-GCCG-----------UCG- -5'
26420 5' -61.6 NC_005345.2 + 1558 0.68 0.293604
Target:  5'- -gGGCACCgugagGCGGCaguCGCCGCCguGGgGGCc -3'
miRNA:   3'- agUCGUGG-----UGCUG---GCGGCGG--CCgUCG- -5'
26420 5' -61.6 NC_005345.2 + 2008 0.66 0.379803
Target:  5'- aCAGCGCCcccuCGcuCCGCUgcuccgggGCCGGCcuGCa -3'
miRNA:   3'- aGUCGUGGu---GCu-GGCGG--------CGGCCGu-CG- -5'
26420 5' -61.6 NC_005345.2 + 2124 0.72 0.147204
Target:  5'- aCGGCGCCGCagugaaagcaGGCC-UCGCCGuGCAGCc -3'
miRNA:   3'- aGUCGUGGUG----------CUGGcGGCGGC-CGUCG- -5'
26420 5' -61.6 NC_005345.2 + 2134 0.66 0.346587
Target:  5'- uUCGG-GCCGCGGCUGCUGCCucGCuuGCc -3'
miRNA:   3'- -AGUCgUGGUGCUGGCGGCGGc-CGu-CG- -5'
26420 5' -61.6 NC_005345.2 + 2676 0.71 0.177127
Target:  5'- aUCGGCgagGCCGCGGgCGUugucgaugugggUGUCGGCGGCg -3'
miRNA:   3'- -AGUCG---UGGUGCUgGCG------------GCGGCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 2770 0.67 0.311027
Target:  5'- cCAcGCGCgGCGGCCucgguacggcuugucGgCGCCGGCGuGCg -3'
miRNA:   3'- aGU-CGUGgUGCUGG---------------CgGCGGCCGU-CG- -5'
26420 5' -61.6 NC_005345.2 + 2828 0.72 0.135847
Target:  5'- cCAGCGCCGCGagGCCGacagcgugCGCUcgGGCGGCg -3'
miRNA:   3'- aGUCGUGGUGC--UGGCg-------GCGG--CCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 2996 0.66 0.346587
Target:  5'- gUCGGCGgUACgGGCgGCCgaggccaguaGCCGgGCGGCg -3'
miRNA:   3'- -AGUCGUgGUG-CUGgCGG----------CGGC-CGUCG- -5'
26420 5' -61.6 NC_005345.2 + 3316 0.7 0.201702
Target:  5'- --cGC-CCGCG-CCGCCGCCGuGCAcGUc -3'
miRNA:   3'- aguCGuGGUGCuGGCGGCGGC-CGU-CG- -5'
26420 5' -61.6 NC_005345.2 + 3629 0.71 0.177127
Target:  5'- --cGCGCCGCagGugUGCCGuccgcagcCCGGCGGCa -3'
miRNA:   3'- aguCGUGGUG--CugGCGGC--------GGCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 3689 0.75 0.092812
Target:  5'- ---cCACCcCGGCCgccgucucgGCCGCCGGCGGCg -3'
miRNA:   3'- agucGUGGuGCUGG---------CGGCGGCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 3812 0.69 0.223448
Target:  5'- cCGGUGCgACGACgGUCGUccgcugcgagguCGGCGGCg -3'
miRNA:   3'- aGUCGUGgUGCUGgCGGCG------------GCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 3940 0.72 0.147204
Target:  5'- -aGGUGCU-CG-CCGCgGCCGGCAGCc -3'
miRNA:   3'- agUCGUGGuGCuGGCGgCGGCCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.