miRNA display CGI


Results 1 - 20 of 362 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26420 5' -61.6 NC_005345.2 + 41622 1.12 0.000134
Target:  5'- aUCAGCACCACGACCGCCGCCGGCAGCa -3'
miRNA:   3'- -AGUCGUGGUGCUGGCGGCGGCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 43652 0.75 0.092812
Target:  5'- gUCAugcGCACCGuCGugccuGCCGCCGCCGGguGg -3'
miRNA:   3'- -AGU---CGUGGU-GC-----UGGCGGCGGCCguCg -5'
26420 5' -61.6 NC_005345.2 + 45987 0.74 0.100783
Target:  5'- cCGGCACCcCGACgagcucgccgaCGCCGUCGGCAcgGCu -3'
miRNA:   3'- aGUCGUGGuGCUG-----------GCGGCGGCCGU--CG- -5'
26420 5' -61.6 NC_005345.2 + 12847 0.66 0.391921
Target:  5'- cCGGCgaggACCGgugacgucgugggggUGGCuCGCCGCCGGguGg -3'
miRNA:   3'- aGUCG----UGGU---------------GCUG-GCGGCGGCCguCg -5'
26420 5' -61.6 NC_005345.2 + 16353 0.79 0.047502
Target:  5'- gCGGCAUCGCGGCCGgCGCC-GCGGUg -3'
miRNA:   3'- aGUCGUGGUGCUGGCgGCGGcCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 25381 0.78 0.053168
Target:  5'- cCGGCucgaCGCGAUCGCCGCCGGCcucGCc -3'
miRNA:   3'- aGUCGug--GUGCUGGCGGCGGCCGu--CG- -5'
26420 5' -61.6 NC_005345.2 + 11336 0.77 0.059322
Target:  5'- -gAGCGCCGCGAgcagugagcggcaCCGCCaaCGGCAGCa -3'
miRNA:   3'- agUCGUGGUGCU-------------GGCGGcgGCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 37482 0.77 0.059489
Target:  5'- gCAGCGCCcCGAaguuggccgcuaCCGCCGCCGuGCAGg -3'
miRNA:   3'- aGUCGUGGuGCU------------GGCGGCGGC-CGUCg -5'
26420 5' -61.6 NC_005345.2 + 7564 0.77 0.066534
Target:  5'- aCGGCAUCACGACCGagcaCGCCcGCgAGCa -3'
miRNA:   3'- aGUCGUGGUGCUGGCg---GCGGcCG-UCG- -5'
26420 5' -61.6 NC_005345.2 + 3689 0.75 0.092812
Target:  5'- ---cCACCcCGGCCgccgucucgGCCGCCGGCGGCg -3'
miRNA:   3'- agucGUGGuGCUGG---------CGGCGGCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 29878 0.76 0.076476
Target:  5'- -uGGaCGCaCGCGGCCGCCGUCGGCAu- -3'
miRNA:   3'- agUC-GUG-GUGCUGGCGGCGGCCGUcg -5'
26420 5' -61.6 NC_005345.2 + 8047 0.77 0.06416
Target:  5'- gCAGCugCACGAgcugcagaucaagcUCGCCGCCGaGCAGg -3'
miRNA:   3'- aGUCGugGUGCU--------------GGCGGCGGC-CGUCg -5'
26420 5' -61.6 NC_005345.2 + 9672 0.85 0.014346
Target:  5'- --cGUACCGCGAgCGCCGCCGGCuGCa -3'
miRNA:   3'- aguCGUGGUGCUgGCGGCGGCCGuCG- -5'
26420 5' -61.6 NC_005345.2 + 11547 0.75 0.08084
Target:  5'- --cGCAgCACGACCGCgaaguucauCGcCCGGCAGCu -3'
miRNA:   3'- aguCGUgGUGCUGGCG---------GC-GGCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 27119 0.8 0.035792
Target:  5'- cUCGGCGCCACGGCgGCaccgGCCGGCgucgAGCu -3'
miRNA:   3'- -AGUCGUGGUGCUGgCGg---CGGCCG----UCG- -5'
26420 5' -61.6 NC_005345.2 + 8710 0.77 0.059489
Target:  5'- cCGGCugugGCCGacuCGuCCGUCGCCGGCGGCg -3'
miRNA:   3'- aGUCG----UGGU---GCuGGCGGCGGCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 21986 0.75 0.08311
Target:  5'- cCGGUACUGCucgGGCCGCUGCCgcacGGCGGCa -3'
miRNA:   3'- aGUCGUGGUG---CUGGCGGCGG----CCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 32710 0.74 0.098057
Target:  5'- cCAGCACaGCaGCCGCCGCUGgacgauGCAGCa -3'
miRNA:   3'- aGUCGUGgUGcUGGCGGCGGC------CGUCG- -5'
26420 5' -61.6 NC_005345.2 + 14924 0.79 0.044894
Target:  5'- gCGGCGCgGCGGCUGCaGCgGGCGGCg -3'
miRNA:   3'- aGUCGUGgUGCUGGCGgCGgCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 28385 0.78 0.053168
Target:  5'- cCAGgGCaCGCG-CCGCCGCggCGGCAGCg -3'
miRNA:   3'- aGUCgUG-GUGCuGGCGGCG--GCCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.