Results 1 - 20 of 362 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26420 | 5' | -61.6 | NC_005345.2 | + | 12847 | 0.66 | 0.391921 |
Target: 5'- cCGGCgaggACCGgugacgucgugggggUGGCuCGCCGCCGGguGg -3' miRNA: 3'- aGUCG----UGGU---------------GCUG-GCGGCGGCCguCg -5' |
|||||||
26420 | 5' | -61.6 | NC_005345.2 | + | 1206 | 0.66 | 0.371302 |
Target: 5'- cCGGC-CCGCGGgccaCGCCGCgCGGUacgggucccauGGCu -3' miRNA: 3'- aGUCGuGGUGCUg---GCGGCG-GCCG-----------UCG- -5' |
|||||||
26420 | 5' | -61.6 | NC_005345.2 | + | 13891 | 0.66 | 0.371302 |
Target: 5'- aCAGCcuucagggugAgCACGAUCGCgucgaaCGCCGGCuugAGCg -3' miRNA: 3'- aGUCG----------UgGUGCUGGCG------GCGGCCG---UCG- -5' |
|||||||
26420 | 5' | -61.6 | NC_005345.2 | + | 7463 | 0.66 | 0.371302 |
Target: 5'- -aAGC-UCGCGua-GUCGCCGGUAGCc -3' miRNA: 3'- agUCGuGGUGCuggCGGCGGCCGUCG- -5' |
|||||||
26420 | 5' | -61.6 | NC_005345.2 | + | 1180 | 0.66 | 0.371302 |
Target: 5'- gCGGCGCaCACGG--GCgGCuCGGCAGUc -3' miRNA: 3'- aGUCGUG-GUGCUggCGgCG-GCCGUCG- -5' |
|||||||
26420 | 5' | -61.6 | NC_005345.2 | + | 40040 | 0.66 | 0.371302 |
Target: 5'- gCAGaucuucgauCACCGCGACgugcgggcgguCGCCGgcgaCGGCGGCc -3' miRNA: 3'- aGUC---------GUGGUGCUG-----------GCGGCg---GCCGUCG- -5' |
|||||||
26420 | 5' | -61.6 | NC_005345.2 | + | 46054 | 0.66 | 0.368777 |
Target: 5'- cCGGgGCCcgagggucgaucagGCGGCCgggGCCGCCGG-GGCc -3' miRNA: 3'- aGUCgUGG--------------UGCUGG---CGGCGGCCgUCG- -5' |
|||||||
26420 | 5' | -61.6 | NC_005345.2 | + | 44571 | 0.66 | 0.362932 |
Target: 5'- --cGCAcuCCACGACCGgaCuCgGGCAGCa -3' miRNA: 3'- aguCGU--GGUGCUGGCg-GcGgCCGUCG- -5' |
|||||||
26420 | 5' | -61.6 | NC_005345.2 | + | 44258 | 0.66 | 0.362932 |
Target: 5'- cUCGGCGagCAuCGACuCGCagcggCGCCGGUAGUc -3' miRNA: 3'- -AGUCGUg-GU-GCUG-GCG-----GCGGCCGUCG- -5' |
|||||||
26420 | 5' | -61.6 | NC_005345.2 | + | 36331 | 0.66 | 0.371302 |
Target: 5'- gCGGCGCagGCGaACCGgCggGCCGaGCGGCu -3' miRNA: 3'- aGUCGUGg-UGC-UGGCgG--CGGC-CGUCG- -5' |
|||||||
26420 | 5' | -61.6 | NC_005345.2 | + | 43926 | 0.66 | 0.371302 |
Target: 5'- gUCGGCgaucaggccgGCCGCGAgCUGCCcgGCCGuGCcggGGCg -3' miRNA: 3'- -AGUCG----------UGGUGCU-GGCGG--CGGC-CG---UCG- -5' |
|||||||
26420 | 5' | -61.6 | NC_005345.2 | + | 29393 | 0.66 | 0.374686 |
Target: 5'- aCGGCu---CGGCCGCCGCCucGGCcucggucgccucgcgGGCg -3' miRNA: 3'- aGUCGugguGCUGGCGGCGG--CCG---------------UCG- -5' |
|||||||
26420 | 5' | -61.6 | NC_005345.2 | + | 7656 | 0.66 | 0.388433 |
Target: 5'- gCGGCAgaGCGGCCGCUGUgaagGGgAGCc -3' miRNA: 3'- aGUCGUggUGCUGGCGGCGg---CCgUCG- -5' |
|||||||
26420 | 5' | -61.6 | NC_005345.2 | + | 11628 | 0.66 | 0.388433 |
Target: 5'- aCAGCccGCCGagcaGGCauagaCGCCuGCaCGGCGGCg -3' miRNA: 3'- aGUCG--UGGUg---CUG-----GCGG-CG-GCCGUCG- -5' |
|||||||
26420 | 5' | -61.6 | NC_005345.2 | + | 30913 | 0.66 | 0.387564 |
Target: 5'- gCAGCACCGgGACCagggcgaGCCcgacCCGaacGCGGCg -3' miRNA: 3'- aGUCGUGGUgCUGG-------CGGc---GGC---CGUCG- -5' |
|||||||
26420 | 5' | -61.6 | NC_005345.2 | + | 26766 | 0.66 | 0.387564 |
Target: 5'- aCAGCucgACCGagccggaacCGACCGCaauacguCGCCcgugcGGCAGCg -3' miRNA: 3'- aGUCG---UGGU---------GCUGGCG-------GCGG-----CCGUCG- -5' |
|||||||
26420 | 5' | -61.6 | NC_005345.2 | + | 42169 | 0.66 | 0.379803 |
Target: 5'- aCAGCgGCCcCGAaagCGCCuGCC-GCAGCg -3' miRNA: 3'- aGUCG-UGGuGCUg--GCGG-CGGcCGUCG- -5' |
|||||||
26420 | 5' | -61.6 | NC_005345.2 | + | 2008 | 0.66 | 0.379803 |
Target: 5'- aCAGCGCCcccuCGcuCCGCUgcuccgggGCCGGCcuGCa -3' miRNA: 3'- aGUCGUGGu---GCu-GGCGG--------CGGCCGu-CG- -5' |
|||||||
26420 | 5' | -61.6 | NC_005345.2 | + | 6283 | 0.66 | 0.379803 |
Target: 5'- aCAGCACgugCGgGGCCGCCuucaucccgGCCGGguucCGGCc -3' miRNA: 3'- aGUCGUG---GUgCUGGCGG---------CGGCC----GUCG- -5' |
|||||||
26420 | 5' | -61.6 | NC_005345.2 | + | 235 | 0.66 | 0.378947 |
Target: 5'- -uGGCGCCACaggcagaGACCcCCGCCGuGUaugucGGCg -3' miRNA: 3'- agUCGUGGUG-------CUGGcGGCGGC-CG-----UCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home