miRNA display CGI


Results 21 - 40 of 362 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26420 5' -61.6 NC_005345.2 + 11465 0.74 0.112418
Target:  5'- gCGGC-CCACGGCCgacgacaucaggGCCGCgcaGGCGGCc -3'
miRNA:   3'- aGUCGuGGUGCUGG------------CGGCGg--CCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 45987 0.74 0.100783
Target:  5'- cCGGCACCcCGACgagcucgccgaCGCCGUCGGCAcgGCu -3'
miRNA:   3'- aGUCGUGGuGCUG-----------GCGGCGGCCGU--CG- -5'
26420 5' -61.6 NC_005345.2 + 8047 0.77 0.06416
Target:  5'- gCAGCugCACGAgcugcagaucaagcUCGCCGCCGaGCAGg -3'
miRNA:   3'- aGUCGugGUGCU--------------GGCGGCGGC-CGUCg -5'
26420 5' -61.6 NC_005345.2 + 14924 0.79 0.044894
Target:  5'- gCGGCGCgGCGGCUGCaGCgGGCGGCg -3'
miRNA:   3'- aGUCGUGgUGCUGGCGgCGgCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 9759 0.73 0.132244
Target:  5'- -gGGCACgGCGAUugCGCCGCCGaggcGUAGCu -3'
miRNA:   3'- agUCGUGgUGCUG--GCGGCGGC----CGUCG- -5'
26420 5' -61.6 NC_005345.2 + 31633 0.73 0.125301
Target:  5'- aCGGUccucGCC-CGGCCGgCGaCCGGCGGCc -3'
miRNA:   3'- aGUCG----UGGuGCUGGCgGC-GGCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 43652 0.75 0.092812
Target:  5'- gUCAugcGCACCGuCGugccuGCCGCCGCCGGguGg -3'
miRNA:   3'- -AGU---CGUGGU-GC-----UGGCGGCGGCCguCg -5'
26420 5' -61.6 NC_005345.2 + 27119 0.8 0.035792
Target:  5'- cUCGGCGCCACGGCgGCaccgGCCGGCgucgAGCu -3'
miRNA:   3'- -AGUCGUGGUGCUGgCGg---CGGCCG----UCG- -5'
26420 5' -61.6 NC_005345.2 + 11372 0.73 0.125301
Target:  5'- nCAGCcCCggucGCGGCCGCCuGCgGGCgAGCa -3'
miRNA:   3'- aGUCGuGG----UGCUGGCGG-CGgCCG-UCG- -5'
26420 5' -61.6 NC_005345.2 + 9672 0.85 0.014346
Target:  5'- --cGUACCGCGAgCGCCGCCGGCuGCa -3'
miRNA:   3'- aguCGUGGUGCUgGCGGCGGCCGuCG- -5'
26420 5' -61.6 NC_005345.2 + 32710 0.74 0.098057
Target:  5'- cCAGCACaGCaGCCGCCGCUGgacgauGCAGCa -3'
miRNA:   3'- aGUCGUGgUGcUGGCGGCGGC------CGUCG- -5'
26420 5' -61.6 NC_005345.2 + 33016 0.74 0.112418
Target:  5'- aUCuGUACCGcCGGgaCGCCGCCGGcCGGCc -3'
miRNA:   3'- -AGuCGUGGU-GCUg-GCGGCGGCC-GUCG- -5'
26420 5' -61.6 NC_005345.2 + 11547 0.75 0.08084
Target:  5'- --cGCAgCACGACCGCgaaguucauCGcCCGGCAGCu -3'
miRNA:   3'- aguCGUgGUGCUGGCG---------GC-GGCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 7564 0.77 0.066534
Target:  5'- aCGGCAUCACGACCGagcaCGCCcGCgAGCa -3'
miRNA:   3'- aGUCGUGGUGCUGGCg---GCGGcCG-UCG- -5'
26420 5' -61.6 NC_005345.2 + 11336 0.77 0.059322
Target:  5'- -gAGCGCCGCGAgcagugagcggcaCCGCCaaCGGCAGCa -3'
miRNA:   3'- agUCGUGGUGCU-------------GGCGGcgGCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 16353 0.79 0.047502
Target:  5'- gCGGCAUCGCGGCCGgCGCC-GCGGUg -3'
miRNA:   3'- aGUCGUGGUGCUGGCgGCGGcCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 16965 0.72 0.147204
Target:  5'- cUCGGCACCuCGGCCgGCUGCCGuGCc-- -3'
miRNA:   3'- -AGUCGUGGuGCUGG-CGGCGGC-CGucg -5'
26420 5' -61.6 NC_005345.2 + 30343 0.72 0.135847
Target:  5'- -aGGC-CCGCG-CCGCCGUcacccugcccgaCGGCAGCc -3'
miRNA:   3'- agUCGuGGUGCuGGCGGCG------------GCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 30908 0.73 0.128729
Target:  5'- aUCuGCaACCcggugACGACCGCCGgCGGCcGCu -3'
miRNA:   3'- -AGuCG-UGG-----UGCUGGCGGCgGCCGuCG- -5'
26420 5' -61.6 NC_005345.2 + 36926 0.73 0.125301
Target:  5'- gUCAuCGCCACGGCUcgggaggcgGCgGCCGGaCAGCg -3'
miRNA:   3'- -AGUcGUGGUGCUGG---------CGgCGGCC-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.