miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26421 3' -59.5 NC_005345.2 + 14349 0.67 0.37964
Target:  5'- aCGGCGuGCgCGAGgaccgcgacCCGGCgcaGCUCGg -3'
miRNA:   3'- -GCCGU-CGgGCUCaau------GGCCGa--CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 6063 0.67 0.39728
Target:  5'- aCGGCGGgcuCCCGAGUgGCUG-CUGCcCGa -3'
miRNA:   3'- -GCCGUC---GGGCUCAaUGGCcGACGaGC- -5'
26421 3' -59.5 NC_005345.2 + 22015 0.67 0.39728
Target:  5'- gGGCAGCUCGAc--GCCGGCcggUGC-CGc -3'
miRNA:   3'- gCCGUCGGGCUcaaUGGCCG---ACGaGC- -5'
26421 3' -59.5 NC_005345.2 + 48221 0.67 0.394601
Target:  5'- cCGGCGGCCgaccuggacauuggCGAGgcGCCGGCgaaGCa-- -3'
miRNA:   3'- -GCCGUCGG--------------GCUCaaUGGCCGa--CGagc -5'
26421 3' -59.5 NC_005345.2 + 38508 0.67 0.37964
Target:  5'- -cGCGGuCCCuGAGUcACgCGuGCUGCUCGa -3'
miRNA:   3'- gcCGUC-GGG-CUCAaUG-GC-CGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 38379 0.67 0.37964
Target:  5'- gCGGCuGUCuCGAcg-GCCGGCagggGCUCGg -3'
miRNA:   3'- -GCCGuCGG-GCUcaaUGGCCGa---CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 29151 0.67 0.37704
Target:  5'- cCGGCAGCCCGccuGUcGCCcucGGCgaaccgggucggcaUGCUCu -3'
miRNA:   3'- -GCCGUCGGGCu--CAaUGG---CCG--------------ACGAGc -5'
26421 3' -59.5 NC_005345.2 + 2548 0.67 0.424706
Target:  5'- gCGGUGGCgacggCGAGUgcCCGGUcgacgUGCUCGg -3'
miRNA:   3'- -GCCGUCGg----GCUCAauGGCCG-----ACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 4466 0.67 0.39728
Target:  5'- gCGGgGGCCCGGcg-GCCGuGUccgGCUCGa -3'
miRNA:   3'- -GCCgUCGGGCUcaaUGGC-CGa--CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 25779 0.67 0.388395
Target:  5'- gGGCAGCUCGGGcgccUCGGCccGCUCc -3'
miRNA:   3'- gCCGUCGGGCUCaau-GGCCGa-CGAGc -5'
26421 3' -59.5 NC_005345.2 + 16926 0.68 0.345968
Target:  5'- -uGCGGCUCauGAGguacgGCCGGCcGCUCGa -3'
miRNA:   3'- gcCGUCGGG--CUCaa---UGGCCGaCGAGC- -5'
26421 3' -59.5 NC_005345.2 + 25659 0.68 0.327598
Target:  5'- -uGUGGCCUGAucgcgaacgccucgGUgcACCGGCUGCUCGc -3'
miRNA:   3'- gcCGUCGGGCU--------------CAa-UGGCCGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 35759 0.68 0.360013
Target:  5'- gCGGCAuCCCGGGgcaggacucgauucCCGcGCUGCUCa -3'
miRNA:   3'- -GCCGUcGGGCUCaau-----------GGC-CGACGAGc -5'
26421 3' -59.5 NC_005345.2 + 23185 0.68 0.371019
Target:  5'- -cGC-GCUCGGGUUcgACCGGCUGCg-- -3'
miRNA:   3'- gcCGuCGGGCUCAA--UGGCCGACGagc -5'
26421 3' -59.5 NC_005345.2 + 11497 0.68 0.337891
Target:  5'- aGGCGGCCCGcaccgacGCCGGaCUGCa-- -3'
miRNA:   3'- gCCGUCGGGCucaa---UGGCC-GACGagc -5'
26421 3' -59.5 NC_005345.2 + 14695 0.68 0.329953
Target:  5'- cCGGCcguGCCCGuGgugUGgCGGCgaGCUCGu -3'
miRNA:   3'- -GCCGu--CGGGCuCa--AUgGCCGa-CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 25577 0.68 0.362533
Target:  5'- gGGCcGCCCGcAGcUGCCGGUgcUGC-CGa -3'
miRNA:   3'- gCCGuCGGGC-UCaAUGGCCG--ACGaGC- -5'
26421 3' -59.5 NC_005345.2 + 3955 0.68 0.345968
Target:  5'- cCGGCAGCCucuCGGGcggcaUACuCGGCUGCg-- -3'
miRNA:   3'- -GCCGUCGG---GCUCa----AUG-GCCGACGagc -5'
26421 3' -59.5 NC_005345.2 + 5164 0.68 0.371019
Target:  5'- gCGGCGGCCgacgagucgggCGAGccGCCGGgCUGCacgcaUCGg -3'
miRNA:   3'- -GCCGUCGG-----------GCUCaaUGGCC-GACG-----AGC- -5'
26421 3' -59.5 NC_005345.2 + 27162 0.68 0.354182
Target:  5'- gCGGCagcGGCCCGAGcagUACCGG--GCaUCGg -3'
miRNA:   3'- -GCCG---UCGGGCUCa--AUGGCCgaCG-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.