Results 1 - 20 of 74 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26421 | 3' | -59.5 | NC_005345.2 | + | 5593 | 0.66 | 0.482768 |
Target: 5'- aGGCGGUCggCGAGcUUGUCGGCgacgaGCUCGg -3' miRNA: 3'- gCCGUCGG--GCUC-AAUGGCCGa----CGAGC- -5' |
|||||||
26421 | 3' | -59.5 | NC_005345.2 | + | 43414 | 0.66 | 0.443606 |
Target: 5'- uCGGCugcGGCCCGGaacacgGCCGGCcugGCgUCGa -3' miRNA: 3'- -GCCG---UCGGGCUcaa---UGGCCGa--CG-AGC- -5' |
|||||||
26421 | 3' | -59.5 | NC_005345.2 | + | 45198 | 0.66 | 0.482768 |
Target: 5'- -uGCcGCCCGAGaggcUGCCGGCcGCggCGa -3' miRNA: 3'- gcCGuCGGGCUCa---AUGGCCGaCGa-GC- -5' |
|||||||
26421 | 3' | -59.5 | NC_005345.2 | + | 24802 | 0.66 | 0.443606 |
Target: 5'- aGGUGGUgcagCCGGGcgACCGGaucgUGCUCGg -3' miRNA: 3'- gCCGUCG----GGCUCaaUGGCCg---ACGAGC- -5' |
|||||||
26421 | 3' | -59.5 | NC_005345.2 | + | 23617 | 0.66 | 0.472816 |
Target: 5'- cCGGCGGaCCGGGca--CGGCUGCg-- -3' miRNA: 3'- -GCCGUCgGGCUCaaugGCCGACGagc -5' |
|||||||
26421 | 3' | -59.5 | NC_005345.2 | + | 31286 | 0.66 | 0.434096 |
Target: 5'- aCGGCGGacCCCGAGgauucccGCCGggcGCUGCUgCGc -3' miRNA: 3'- -GCCGUC--GGGCUCaa-----UGGC---CGACGA-GC- -5' |
|||||||
26421 | 3' | -59.5 | NC_005345.2 | + | 40177 | 0.66 | 0.482768 |
Target: 5'- gCGcGCAGCUgcggauCGAG--GCCGGCgugcaGCUCGg -3' miRNA: 3'- -GC-CGUCGG------GCUCaaUGGCCGa----CGAGC- -5' |
|||||||
26421 | 3' | -59.5 | NC_005345.2 | + | 5662 | 0.66 | 0.434096 |
Target: 5'- cCGGCGGgcccggaCCGAGccgACCGcGCUGCgccgCGa -3' miRNA: 3'- -GCCGUCg------GGCUCaa-UGGC-CGACGa---GC- -5' |
|||||||
26421 | 3' | -59.5 | NC_005345.2 | + | 36042 | 0.66 | 0.46297 |
Target: 5'- gGGCAGUCCGGG--AUCGcGaagaUGCUCGc -3' miRNA: 3'- gCCGUCGGGCUCaaUGGC-Cg---ACGAGC- -5' |
|||||||
26421 | 3' | -59.5 | NC_005345.2 | + | 38300 | 0.66 | 0.441695 |
Target: 5'- gCGGCAGUCCGcccaccgcaGCuCGGCgccgGCUCGu -3' miRNA: 3'- -GCCGUCGGGCucaa-----UG-GCCGa---CGAGC- -5' |
|||||||
26421 | 3' | -59.5 | NC_005345.2 | + | 4340 | 0.66 | 0.443606 |
Target: 5'- uCGGCcgAGCCgGGGUccUGCCucgggcgggcgGGCcGCUCGg -3' miRNA: 3'- -GCCG--UCGGgCUCA--AUGG-----------CCGaCGAGC- -5' |
|||||||
26421 | 3' | -59.5 | NC_005345.2 | + | 36885 | 0.66 | 0.46297 |
Target: 5'- uCGGCguacGGUCCGAacgaGCCGGgcCUGCUCGc -3' miRNA: 3'- -GCCG----UCGGGCUcaa-UGGCC--GACGAGC- -5' |
|||||||
26421 | 3' | -59.5 | NC_005345.2 | + | 32996 | 0.66 | 0.461013 |
Target: 5'- aGGCGGCCgGGGUgGCgggGGCgucgacgaucggGCUCGg -3' miRNA: 3'- gCCGUCGGgCUCAaUGg--CCGa-----------CGAGC- -5' |
|||||||
26421 | 3' | -59.5 | NC_005345.2 | + | 34247 | 0.66 | 0.453232 |
Target: 5'- -cGCGGCCCGcuUcGCCcGCUGCUCc -3' miRNA: 3'- gcCGUCGGGCucAaUGGcCGACGAGc -5' |
|||||||
26421 | 3' | -59.5 | NC_005345.2 | + | 8608 | 0.66 | 0.453232 |
Target: 5'- gGGCAGCUCGGcgaucacgaacGUU-CCGGCgGCgUCGc -3' miRNA: 3'- gCCGUCGGGCU-----------CAAuGGCCGaCG-AGC- -5' |
|||||||
26421 | 3' | -59.5 | NC_005345.2 | + | 6063 | 0.67 | 0.39728 |
Target: 5'- aCGGCGGgcuCCCGAGUgGCUG-CUGCcCGa -3' miRNA: 3'- -GCCGUC---GGGCUCAaUGGCcGACGaGC- -5' |
|||||||
26421 | 3' | -59.5 | NC_005345.2 | + | 29151 | 0.67 | 0.37704 |
Target: 5'- cCGGCAGCCCGccuGUcGCCcucGGCgaaccgggucggcaUGCUCu -3' miRNA: 3'- -GCCGUCGGGCu--CAaUGG---CCG--------------ACGAGc -5' |
|||||||
26421 | 3' | -59.5 | NC_005345.2 | + | 38379 | 0.67 | 0.37964 |
Target: 5'- gCGGCuGUCuCGAcg-GCCGGCagggGCUCGg -3' miRNA: 3'- -GCCGuCGG-GCUcaaUGGCCGa---CGAGC- -5' |
|||||||
26421 | 3' | -59.5 | NC_005345.2 | + | 38508 | 0.67 | 0.37964 |
Target: 5'- -cGCGGuCCCuGAGUcACgCGuGCUGCUCGa -3' miRNA: 3'- gcCGUC-GGG-CUCAaUG-GC-CGACGAGC- -5' |
|||||||
26421 | 3' | -59.5 | NC_005345.2 | + | 25779 | 0.67 | 0.388395 |
Target: 5'- gGGCAGCUCGGGcgccUCGGCccGCUCc -3' miRNA: 3'- gCCGUCGGGCUCaau-GGCCGa-CGAGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home