miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26421 3' -59.5 NC_005345.2 + 2548 0.67 0.424706
Target:  5'- gCGGUGGCgacggCGAGUgcCCGGUcgacgUGCUCGg -3'
miRNA:   3'- -GCCGUCGg----GCUCAauGGCCG-----ACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 2776 0.71 0.221532
Target:  5'- gCGGCGGCCuCGGuacggcuugucGgcGCCGGCgugcGCUCGa -3'
miRNA:   3'- -GCCGUCGG-GCU-----------CaaUGGCCGa---CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 3658 0.69 0.314491
Target:  5'- gCGGCAGCggCCGGGaucgugucguUUGCCGGgUGgUCGc -3'
miRNA:   3'- -GCCGUCG--GGCUC----------AAUGGCCgACgAGC- -5'
26421 3' -59.5 NC_005345.2 + 3955 0.68 0.345968
Target:  5'- cCGGCAGCCucuCGGGcggcaUACuCGGCUGCg-- -3'
miRNA:   3'- -GCCGUCGG---GCUCa----AUG-GCCGACGagc -5'
26421 3' -59.5 NC_005345.2 + 4108 0.67 0.409938
Target:  5'- gGGCAcaccCCCGAGcgguuggcguucgAgCGGCUGCUCGc -3'
miRNA:   3'- gCCGUc---GGGCUCaa-----------UgGCCGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 4282 0.72 0.204936
Target:  5'- gGGCAGCUCGGGcu-CgGGCUGCgguUCGa -3'
miRNA:   3'- gCCGUCGGGCUCaauGgCCGACG---AGC- -5'
26421 3' -59.5 NC_005345.2 + 4340 0.66 0.443606
Target:  5'- uCGGCcgAGCCgGGGUccUGCCucgggcgggcgGGCcGCUCGg -3'
miRNA:   3'- -GCCG--UCGGgCUCA--AUGG-----------CCGaCGAGC- -5'
26421 3' -59.5 NC_005345.2 + 4466 0.67 0.39728
Target:  5'- gCGGgGGCCCGGcg-GCCGuGUccgGCUCGa -3'
miRNA:   3'- -GCCgUCGGGCUcaaUGGC-CGa--CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 5164 0.68 0.371019
Target:  5'- gCGGCGGCCgacgagucgggCGAGccGCCGGgCUGCacgcaUCGg -3'
miRNA:   3'- -GCCGUCGG-----------GCUCaaUGGCC-GACG-----AGC- -5'
26421 3' -59.5 NC_005345.2 + 5186 0.68 0.34353
Target:  5'- aGGCucGCCCGAGguccgccccggcacgGCCGgGCaGCUCGc -3'
miRNA:   3'- gCCGu-CGGGCUCaa-------------UGGC-CGaCGAGC- -5'
26421 3' -59.5 NC_005345.2 + 5593 0.66 0.482768
Target:  5'- aGGCGGUCggCGAGcUUGUCGGCgacgaGCUCGg -3'
miRNA:   3'- gCCGUCGG--GCUC-AAUGGCCGa----CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 5662 0.66 0.434096
Target:  5'- cCGGCGGgcccggaCCGAGccgACCGcGCUGCgccgCGa -3'
miRNA:   3'- -GCCGUCg------GGCUCaa-UGGC-CGACGa---GC- -5'
26421 3' -59.5 NC_005345.2 + 5838 0.69 0.295218
Target:  5'- gGGCacgAGCCUGcugugcaguuccuuaAGUUGCCGcGCcUGCUCGg -3'
miRNA:   3'- gCCG---UCGGGC---------------UCAAUGGC-CG-ACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 6063 0.67 0.39728
Target:  5'- aCGGCGGgcuCCCGAGUgGCUG-CUGCcCGa -3'
miRNA:   3'- -GCCGUC---GGGCUCAaUGGCcGACGaGC- -5'
26421 3' -59.5 NC_005345.2 + 6489 0.68 0.337891
Target:  5'- gCGGCgAGCCCGAGgcguggacGCCGcaggGCUCGa -3'
miRNA:   3'- -GCCG-UCGGGCUCaa------UGGCcga-CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 8608 0.66 0.453232
Target:  5'- gGGCAGCUCGGcgaucacgaacGUU-CCGGCgGCgUCGc -3'
miRNA:   3'- gCCGUCGGGCU-----------CAAuGGCCGaCG-AGC- -5'
26421 3' -59.5 NC_005345.2 + 8929 0.67 0.388395
Target:  5'- aCGGCGGCCgcccccgugggCGGGcUGCgGG-UGCUCGg -3'
miRNA:   3'- -GCCGUCGG-----------GCUCaAUGgCCgACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 9961 0.69 0.285228
Target:  5'- -cGCGGCCCGGGUU-CgGGCUGggguccgcCUCGa -3'
miRNA:   3'- gcCGUCGGGCUCAAuGgCCGAC--------GAGC- -5'
26421 3' -59.5 NC_005345.2 + 10717 0.69 0.314491
Target:  5'- gCGGCAGCUCGucg-GCCGGauggccgcGCUCGa -3'
miRNA:   3'- -GCCGUCGGGCucaaUGGCCga------CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 11497 0.68 0.337891
Target:  5'- aGGCGGCCCGcaccgacGCCGGaCUGCa-- -3'
miRNA:   3'- gCCGUCGGGCucaa---UGGCC-GACGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.