miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26421 3' -59.5 NC_005345.2 + 42050 1.09 0.000321
Target:  5'- cCGGCAGCCCGAGUUACCGGCUGCUCGg -3'
miRNA:   3'- -GCCGUCGGGCUCAAUGGCCGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 25577 0.68 0.362533
Target:  5'- gGGCcGCCCGcAGcUGCCGGUgcUGC-CGa -3'
miRNA:   3'- gCCGuCGGGC-UCaAUGGCCG--ACGaGC- -5'
26421 3' -59.5 NC_005345.2 + 47946 0.68 0.362533
Target:  5'- gCGGCguGGCCCGcgg-GCCGGaCUGC-CGa -3'
miRNA:   3'- -GCCG--UCGGGCucaaUGGCC-GACGaGC- -5'
26421 3' -59.5 NC_005345.2 + 45198 0.66 0.482768
Target:  5'- -uGCcGCCCGAGaggcUGCCGGCcGCggCGa -3'
miRNA:   3'- gcCGuCGGGCUCa---AUGGCCGaCGa-GC- -5'
26421 3' -59.5 NC_005345.2 + 44869 0.7 0.264722
Target:  5'- -cGCAGCCCGAGc--CCGaGCUGCcCGc -3'
miRNA:   3'- gcCGUCGGGCUCaauGGC-CGACGaGC- -5'
26421 3' -59.5 NC_005345.2 + 37556 0.7 0.271421
Target:  5'- cCGGCaccucGGCCCGAGgcgggcgcagGCgGGCUGCaggCGg -3'
miRNA:   3'- -GCCG-----UCGGGCUCaa--------UGgCCGACGa--GC- -5'
26421 3' -59.5 NC_005345.2 + 10717 0.69 0.314491
Target:  5'- gCGGCAGCUCGucg-GCCGGauggccgcGCUCGa -3'
miRNA:   3'- -GCCGUCGGGCucaaUGGCCga------CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 14820 0.69 0.319839
Target:  5'- gGGCGcggguguggucgacGCCCGAGcagcUUGCCGgGCUGCagCGg -3'
miRNA:   3'- gCCGU--------------CGGGCUC----AAUGGC-CGACGa-GC- -5'
26421 3' -59.5 NC_005345.2 + 11497 0.68 0.337891
Target:  5'- aGGCGGCCCGcaccgacGCCGGaCUGCa-- -3'
miRNA:   3'- gCCGUCGGGCucaa---UGGCC-GACGagc -5'
26421 3' -59.5 NC_005345.2 + 35759 0.68 0.360013
Target:  5'- gCGGCAuCCCGGGgcaggacucgauucCCGcGCUGCUCa -3'
miRNA:   3'- -GCCGUcGGGCUCaau-----------GGC-CGACGAGc -5'
26421 3' -59.5 NC_005345.2 + 5186 0.68 0.34353
Target:  5'- aGGCucGCCCGAGguccgccccggcacgGCCGgGCaGCUCGc -3'
miRNA:   3'- gCCGu-CGGGCUCaa-------------UGGC-CGaCGAGC- -5'
26421 3' -59.5 NC_005345.2 + 14695 0.68 0.329953
Target:  5'- cCGGCcguGCCCGuGgugUGgCGGCgaGCUCGu -3'
miRNA:   3'- -GCCGu--CGGGCuCa--AUgGCCGa-CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 39511 0.73 0.157206
Target:  5'- cCGGguGCCCGAGUggacCCGGCcGaUCGa -3'
miRNA:   3'- -GCCguCGGGCUCAau--GGCCGaCgAGC- -5'
26421 3' -59.5 NC_005345.2 + 16926 0.68 0.345968
Target:  5'- -uGCGGCUCauGAGguacgGCCGGCcGCUCGa -3'
miRNA:   3'- gcCGUCGGG--CUCaa---UGGCCGaCGAGC- -5'
26421 3' -59.5 NC_005345.2 + 48593 0.71 0.233222
Target:  5'- gCGGCGGgC-GAGgacccacGCCGGCUGUUCGg -3'
miRNA:   3'- -GCCGUCgGgCUCaa-----UGGCCGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 25659 0.68 0.327598
Target:  5'- -uGUGGCCUGAucgcgaacgccucgGUgcACCGGCUGCUCGc -3'
miRNA:   3'- gcCGUCGGGCU--------------CAa-UGGCCGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 15376 0.68 0.356673
Target:  5'- aCGGCagcgcggggguacuuGGCCCGGGUgcUGCCugcgacgGGCaccgGCUCGg -3'
miRNA:   3'- -GCCG---------------UCGGGCUCA--AUGG-------CCGa---CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 30370 0.68 0.362533
Target:  5'- aCGGCAGCCCGcg--GCgGGCgcaGgUCGa -3'
miRNA:   3'- -GCCGUCGGGCucaaUGgCCGa--CgAGC- -5'
26421 3' -59.5 NC_005345.2 + 28428 0.7 0.244804
Target:  5'- uCGGUcgccgagGGCCgCGAGaugUACCGcgaGCUGCUCGg -3'
miRNA:   3'- -GCCG-------UCGG-GCUCa--AUGGC---CGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 9961 0.69 0.285228
Target:  5'- -cGCGGCCCGGGUU-CgGGCUGggguccgcCUCGa -3'
miRNA:   3'- gcCGUCGGGCUCAAuGgCCGAC--------GAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.