miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26421 3' -59.5 NC_005345.2 + 42050 1.09 0.000321
Target:  5'- cCGGCAGCCCGAGUUACCGGCUGCUCGg -3'
miRNA:   3'- -GCCGUCGGGCUCAAUGGCCGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 19535 0.75 0.119754
Target:  5'- gCGGCAGCCCcaucGAGgacaggACCGuguucaGCUGCUCGa -3'
miRNA:   3'- -GCCGUCGGG----CUCaa----UGGC------CGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 39511 0.73 0.157206
Target:  5'- cCGGguGCCCGAGUggacCCGGCcGaUCGa -3'
miRNA:   3'- -GCCguCGGGCUCAau--GGCCGaCgAGC- -5'
26421 3' -59.5 NC_005345.2 + 39456 0.72 0.19448
Target:  5'- gCGGCGGCCCGcugaucGGccugcaGCCGGCggcGCUCGc -3'
miRNA:   3'- -GCCGUCGGGC------UCaa----UGGCCGa--CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 25058 0.72 0.204936
Target:  5'- gCGGCGuacGCaCCGAGUgccacgGCCGGCcgaucgGCUCGc -3'
miRNA:   3'- -GCCGU---CG-GGCUCAa-----UGGCCGa-----CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 37356 0.72 0.204936
Target:  5'- gCGGCGuGCCCGAGcagcUUugCGGCcucGCUCu -3'
miRNA:   3'- -GCCGU-CGGGCUC----AAugGCCGa--CGAGc -5'
26421 3' -59.5 NC_005345.2 + 4282 0.72 0.204936
Target:  5'- gGGCAGCUCGGGcu-CgGGCUGCgguUCGa -3'
miRNA:   3'- gCCGUCGGGCUCaauGgCCGACG---AGC- -5'
26421 3' -59.5 NC_005345.2 + 35178 0.71 0.221532
Target:  5'- gGGCGuCCCGGGUUGCUGGCagGCa-- -3'
miRNA:   3'- gCCGUcGGGCUCAAUGGCCGa-CGagc -5'
26421 3' -59.5 NC_005345.2 + 2776 0.71 0.221532
Target:  5'- gCGGCGGCCuCGGuacggcuugucGgcGCCGGCgugcGCUCGa -3'
miRNA:   3'- -GCCGUCGG-GCU-----------CaaUGGCCGa---CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 48593 0.71 0.233222
Target:  5'- gCGGCGGgC-GAGgacccacGCCGGCUGUUCGg -3'
miRNA:   3'- -GCCGUCgGgCUCaa-----UGGCCGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 15910 0.71 0.233222
Target:  5'- gGGCcgugugaucGGUUCGGGggGCCGGCUcuGCUCGu -3'
miRNA:   3'- gCCG---------UCGGGCUCaaUGGCCGA--CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 28428 0.7 0.244804
Target:  5'- uCGGUcgccgagGGCCgCGAGaugUACCGcgaGCUGCUCGg -3'
miRNA:   3'- -GCCG-------UCGG-GCUCa--AUGGC---CGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 18874 0.7 0.25686
Target:  5'- uCGGCuGCUCGGGcucgacgagcCCGGCcUGCUCGg -3'
miRNA:   3'- -GCCGuCGGGCUCaau-------GGCCG-ACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 44869 0.7 0.264722
Target:  5'- -cGCAGCCCGAGc--CCGaGCUGCcCGc -3'
miRNA:   3'- gcCGUCGGGCUCaauGGC-CGACGaGC- -5'
26421 3' -59.5 NC_005345.2 + 37556 0.7 0.271421
Target:  5'- cCGGCaccucGGCCCGAGgcgggcgcagGCgGGCUGCaggCGg -3'
miRNA:   3'- -GCCG-----UCGGGCUCaa--------UGgCCGACGa--GC- -5'
26421 3' -59.5 NC_005345.2 + 24209 0.69 0.285228
Target:  5'- gGGCcgAGUUCGAGUcGCggCGGCUGCUCc -3'
miRNA:   3'- gCCG--UCGGGCUCAaUG--GCCGACGAGc -5'
26421 3' -59.5 NC_005345.2 + 46074 0.69 0.285228
Target:  5'- aGGCGGCCgGGGccGCCGGggcCUGCgCGg -3'
miRNA:   3'- gCCGUCGGgCUCaaUGGCC---GACGaGC- -5'
26421 3' -59.5 NC_005345.2 + 9961 0.69 0.285228
Target:  5'- -cGCGGCCCGGGUU-CgGGCUGggguccgcCUCGa -3'
miRNA:   3'- gcCGUCGGGCUCAAuGgCCGAC--------GAGC- -5'
26421 3' -59.5 NC_005345.2 + 41436 0.69 0.292337
Target:  5'- gCGGCAGCUCG---UACCGGCgGCacUCGc -3'
miRNA:   3'- -GCCGUCGGGCucaAUGGCCGaCG--AGC- -5'
26421 3' -59.5 NC_005345.2 + 5838 0.69 0.295218
Target:  5'- gGGCacgAGCCUGcugugcaguuccuuaAGUUGCCGcGCcUGCUCGg -3'
miRNA:   3'- gCCG---UCGGGC---------------UCAAUGGC-CG-ACGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.