miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26421 3' -59.5 NC_005345.2 + 41072 0.68 0.354182
Target:  5'- -uGCAGCCCG----GCCGcCUGCUCGg -3'
miRNA:   3'- gcCGUCGGGCucaaUGGCcGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 16926 0.68 0.345968
Target:  5'- -uGCGGCUCauGAGguacgGCCGGCcGCUCGa -3'
miRNA:   3'- gcCGUCGGG--CUCaa---UGGCCGaCGAGC- -5'
26421 3' -59.5 NC_005345.2 + 3955 0.68 0.345968
Target:  5'- cCGGCAGCCucuCGGGcggcaUACuCGGCUGCg-- -3'
miRNA:   3'- -GCCGUCGG---GCUCa----AUG-GCCGACGagc -5'
26421 3' -59.5 NC_005345.2 + 5186 0.68 0.34353
Target:  5'- aGGCucGCCCGAGguccgccccggcacgGCCGgGCaGCUCGc -3'
miRNA:   3'- gCCGu-CGGGCUCaa-------------UGGC-CGaCGAGC- -5'
26421 3' -59.5 NC_005345.2 + 6489 0.68 0.337891
Target:  5'- gCGGCgAGCCCGAGgcguggacGCCGcaggGCUCGa -3'
miRNA:   3'- -GCCG-UCGGGCUCaa------UGGCcga-CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 11497 0.68 0.337891
Target:  5'- aGGCGGCCCGcaccgacGCCGGaCUGCa-- -3'
miRNA:   3'- gCCGUCGGGCucaa---UGGCC-GACGagc -5'
26421 3' -59.5 NC_005345.2 + 42431 0.68 0.329953
Target:  5'- gGGCuuGCacaCCGuGcccGCCGGCUGCUCGu -3'
miRNA:   3'- gCCGu-CG---GGCuCaa-UGGCCGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 14695 0.68 0.329953
Target:  5'- cCGGCcguGCCCGuGgugUGgCGGCgaGCUCGu -3'
miRNA:   3'- -GCCGu--CGGGCuCa--AUgGCCGa-CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 25659 0.68 0.327598
Target:  5'- -uGUGGCCUGAucgcgaacgccucgGUgcACCGGCUGCUCGc -3'
miRNA:   3'- gcCGUCGGGCU--------------CAa-UGGCCGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 14820 0.69 0.319839
Target:  5'- gGGCGcggguguggucgacGCCCGAGcagcUUGCCGgGCUGCagCGg -3'
miRNA:   3'- gCCGU--------------CGGGCUC----AAUGGC-CGACGa-GC- -5'
26421 3' -59.5 NC_005345.2 + 10717 0.69 0.314491
Target:  5'- gCGGCAGCUCGucg-GCCGGauggccgcGCUCGa -3'
miRNA:   3'- -GCCGUCGGGCucaaUGGCCga------CGAGC- -5'
26421 3' -59.5 NC_005345.2 + 3658 0.69 0.314491
Target:  5'- gCGGCAGCggCCGGGaucgugucguUUGCCGGgUGgUCGc -3'
miRNA:   3'- -GCCGUCG--GGCUC----------AAUGGCCgACgAGC- -5'
26421 3' -59.5 NC_005345.2 + 31206 0.69 0.313732
Target:  5'- gCGGCGGgugcgcaCCCGGGUgcgGCCGGgUGUaCGg -3'
miRNA:   3'- -GCCGUC-------GGGCUCAa--UGGCCgACGaGC- -5'
26421 3' -59.5 NC_005345.2 + 43095 0.69 0.306968
Target:  5'- uCGGgAGCCCGccguagcgcGGUgagcUGCaguGGCUGCUCGu -3'
miRNA:   3'- -GCCgUCGGGC---------UCA----AUGg--CCGACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 5838 0.69 0.295218
Target:  5'- gGGCacgAGCCUGcugugcaguuccuuaAGUUGCCGcGCcUGCUCGg -3'
miRNA:   3'- gCCG---UCGGGC---------------UCAAUGGC-CG-ACGAGC- -5'
26421 3' -59.5 NC_005345.2 + 41436 0.69 0.292337
Target:  5'- gCGGCAGCUCG---UACCGGCgGCacUCGc -3'
miRNA:   3'- -GCCGUCGGGCucaAUGGCCGaCG--AGC- -5'
26421 3' -59.5 NC_005345.2 + 9961 0.69 0.285228
Target:  5'- -cGCGGCCCGGGUU-CgGGCUGggguccgcCUCGa -3'
miRNA:   3'- gcCGUCGGGCUCAAuGgCCGAC--------GAGC- -5'
26421 3' -59.5 NC_005345.2 + 24209 0.69 0.285228
Target:  5'- gGGCcgAGUUCGAGUcGCggCGGCUGCUCc -3'
miRNA:   3'- gCCG--UCGGGCUCAaUG--GCCGACGAGc -5'
26421 3' -59.5 NC_005345.2 + 46074 0.69 0.285228
Target:  5'- aGGCGGCCgGGGccGCCGGggcCUGCgCGg -3'
miRNA:   3'- gCCGUCGGgCUCaaUGGCC---GACGaGC- -5'
26421 3' -59.5 NC_005345.2 + 37556 0.7 0.271421
Target:  5'- cCGGCaccucGGCCCGAGgcgggcgcagGCgGGCUGCaggCGg -3'
miRNA:   3'- -GCCG-----UCGGGCUCaa--------UGgCCGACGa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.