miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26421 5' -55.5 NC_005345.2 + 46799 0.68 0.542399
Target:  5'- -cCGGGCUGCGCcgccaaGCACgCUCGGAc- -3'
miRNA:   3'- caGCUCGAUGCGc-----CGUGgGAGCUUuc -5'
26421 5' -55.5 NC_005345.2 + 2036 0.68 0.553225
Target:  5'- cGUCGAGCgggcccgGCGCGGC-CCggCGGGc- -3'
miRNA:   3'- -CAGCUCGa------UGCGCCGuGGgaGCUUuc -5'
26421 5' -55.5 NC_005345.2 + 20039 0.68 0.560842
Target:  5'- --aGAGCagcCGCGGCggaugguucacggaGCCCUCGAAGc -3'
miRNA:   3'- cagCUCGau-GCGCCG--------------UGGGAGCUUUc -5'
26421 5' -55.5 NC_005345.2 + 38354 0.67 0.57506
Target:  5'- aUCGAGCcggUccgccugccgcaGCGCGGCugUCUCGAcGGc -3'
miRNA:   3'- cAGCUCG---A------------UGCGCCGugGGAGCUuUC- -5'
26421 5' -55.5 NC_005345.2 + 45793 0.67 0.57506
Target:  5'- cUCGAuGCUccgcgcgaucgaACGCGGCGCCCgcagccCGAGu- -3'
miRNA:   3'- cAGCU-CGA------------UGCGCCGUGGGa-----GCUUuc -5'
26421 5' -55.5 NC_005345.2 + 39328 0.67 0.57506
Target:  5'- cGUCGAGgaCUAUGaGGCAcCCCUCGGc-- -3'
miRNA:   3'- -CAGCUC--GAUGCgCCGU-GGGAGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 26994 0.67 0.57506
Target:  5'- uGUCGAGCcugcgggACGCGGaCGCggucgaguuCCUCGAucGg -3'
miRNA:   3'- -CAGCUCGa------UGCGCC-GUG---------GGAGCUuuC- -5'
26421 5' -55.5 NC_005345.2 + 16882 0.67 0.586053
Target:  5'- -cCGAGCgugGCGgcggaaGGCGCCCgUCGAGGc -3'
miRNA:   3'- caGCUCGa--UGCg-----CCGUGGG-AGCUUUc -5'
26421 5' -55.5 NC_005345.2 + 42875 0.67 0.586053
Target:  5'- gGUCG-GUgACGCccGGCGCCCaCGGAGGa -3'
miRNA:   3'- -CAGCuCGaUGCG--CCGUGGGaGCUUUC- -5'
26421 5' -55.5 NC_005345.2 + 45515 0.67 0.597086
Target:  5'- -cCGGGCUGCGgaCGGCACaCCUgCGGc-- -3'
miRNA:   3'- caGCUCGAUGC--GCCGUG-GGA-GCUuuc -5'
26421 5' -55.5 NC_005345.2 + 36706 0.67 0.597086
Target:  5'- -gCGAGCUGCGCGaGguaGCCCgcgCGAc-- -3'
miRNA:   3'- caGCUCGAUGCGC-Cg--UGGGa--GCUuuc -5'
26421 5' -55.5 NC_005345.2 + 19005 0.67 0.597086
Target:  5'- -cCGAGCgGgGCGGCG-CCUCGAc-- -3'
miRNA:   3'- caGCUCGaUgCGCCGUgGGAGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 30930 0.67 0.608148
Target:  5'- -gCGAGCccgacccgaACGCGGCGCCCcacUCGGc-- -3'
miRNA:   3'- caGCUCGa--------UGCGCCGUGGG---AGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 29764 0.67 0.608148
Target:  5'- -gCGAcGCUGCuCGGCAcgaccgccgaguCCCUCGAAGa -3'
miRNA:   3'- caGCU-CGAUGcGCCGU------------GGGAGCUUUc -5'
26421 5' -55.5 NC_005345.2 + 30586 0.67 0.619232
Target:  5'- -cCGAcGCUGgGCGcGCACCCggCGAGc- -3'
miRNA:   3'- caGCU-CGAUgCGC-CGUGGGa-GCUUuc -5'
26421 5' -55.5 NC_005345.2 + 2352 0.67 0.629218
Target:  5'- -gCGuGCUugGCGGCGCagcccggucgcgaCCUCGcgGGc -3'
miRNA:   3'- caGCuCGAugCGCCGUG-------------GGAGCuuUC- -5'
26421 5' -55.5 NC_005345.2 + 9056 0.67 0.634767
Target:  5'- -cCGAGCagGCGCGGCGCCauugcugcccgcggUCGAcGGu -3'
miRNA:   3'- caGCUCGa-UGCGCCGUGGg-------------AGCUuUC- -5'
26421 5' -55.5 NC_005345.2 + 37511 0.66 0.641424
Target:  5'- -gCGGGCUgcgGCGCGGUGCgCUCGc--- -3'
miRNA:   3'- caGCUCGA---UGCGCCGUGgGAGCuuuc -5'
26421 5' -55.5 NC_005345.2 + 20705 0.66 0.641424
Target:  5'- -cCGAGCagcuCGCGGUacaucucgcgGCCCUCGGc-- -3'
miRNA:   3'- caGCUCGau--GCGCCG----------UGGGAGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 35752 0.66 0.641424
Target:  5'- -aCGAGCg--GCGGCAUCC-CGggGc -3'
miRNA:   3'- caGCUCGaugCGCCGUGGGaGCuuUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.