miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26421 5' -55.5 NC_005345.2 + 42084 1.1 0.000735
Target:  5'- cGUCGAGCUACGCGGCACCCUCGAAAGg -3'
miRNA:   3'- -CAGCUCGAUGCGCCGUGGGAGCUUUC- -5'
26421 5' -55.5 NC_005345.2 + 27145 0.78 0.130689
Target:  5'- cGUCGAGCUgcccgaggcgcuGCGCGGCGuCCCgcCGGAGGa -3'
miRNA:   3'- -CAGCUCGA------------UGCGCCGU-GGGa-GCUUUC- -5'
26421 5' -55.5 NC_005345.2 + 3378 0.74 0.234399
Target:  5'- -aCGAGCUgggcggcgagguccgGCGCGGCAuccCCCUCGAc-- -3'
miRNA:   3'- caGCUCGA---------------UGCGCCGU---GGGAGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 13661 0.74 0.238125
Target:  5'- -aCGAGCaGCGCGcCGCCCUCGAc-- -3'
miRNA:   3'- caGCUCGaUGCGCcGUGGGAGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 21129 0.73 0.278149
Target:  5'- cGUCGAGgcCUGCGCGcuccGCAUCCUCGAc-- -3'
miRNA:   3'- -CAGCUC--GAUGCGC----CGUGGGAGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 4132 0.72 0.307702
Target:  5'- uUCGAGCggcugcuCGCGGCGCUCgUCGAGc- -3'
miRNA:   3'- cAGCUCGau-----GCGCCGUGGG-AGCUUuc -5'
26421 5' -55.5 NC_005345.2 + 34145 0.72 0.339594
Target:  5'- aUCGAGUgGCGCGGCggcgGCCC-CGAGGa -3'
miRNA:   3'- cAGCUCGaUGCGCCG----UGGGaGCUUUc -5'
26421 5' -55.5 NC_005345.2 + 38041 0.71 0.365045
Target:  5'- -gUGAGCUGCGCGGCgACCCa------ -3'
miRNA:   3'- caGCUCGAUGCGCCG-UGGGagcuuuc -5'
26421 5' -55.5 NC_005345.2 + 12159 0.71 0.373817
Target:  5'- --gGAGCUGCGCacggGGCucgccGCCCUCGGAu- -3'
miRNA:   3'- cagCUCGAUGCG----CCG-----UGGGAGCUUuc -5'
26421 5' -55.5 NC_005345.2 + 2759 0.71 0.373817
Target:  5'- uGUgGAGCgcgccacGCGCGGCGgCCUCGGu-- -3'
miRNA:   3'- -CAgCUCGa------UGCGCCGUgGGAGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 10486 0.71 0.38273
Target:  5'- -gUGAGCggcagAUGaaCGGCACCCUCGAcGGg -3'
miRNA:   3'- caGCUCGa----UGC--GCCGUGGGAGCUuUC- -5'
26421 5' -55.5 NC_005345.2 + 3339 0.7 0.419765
Target:  5'- cUCGGGCUGCG-GGCGCCgcgUUCGAu-- -3'
miRNA:   3'- cAGCUCGAUGCgCCGUGG---GAGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 12304 0.7 0.439079
Target:  5'- aUCGAGUgccccgagUGCGCGGCGCCgaUCGGu-- -3'
miRNA:   3'- cAGCUCG--------AUGCGCCGUGGg-AGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 5161 0.69 0.45889
Target:  5'- -aCGAGCgacuCGuCGcCGCCCUCGAAGGc -3'
miRNA:   3'- caGCUCGau--GC-GCcGUGGGAGCUUUC- -5'
26421 5' -55.5 NC_005345.2 + 46122 0.69 0.45889
Target:  5'- uGUCGGGgUcgaaGCGGCGgCCUCGGAAc -3'
miRNA:   3'- -CAGCUCgAug--CGCCGUgGGAGCUUUc -5'
26421 5' -55.5 NC_005345.2 + 19014 0.69 0.468972
Target:  5'- -aCGGGUgGCGCGcCGCCCUCGGGc- -3'
miRNA:   3'- caGCUCGaUGCGCcGUGGGAGCUUuc -5'
26421 5' -55.5 NC_005345.2 + 21837 0.69 0.479167
Target:  5'- aUCGAcuGCUGCGCGGCAUgCgugCGGGc- -3'
miRNA:   3'- cAGCU--CGAUGCGCCGUGgGa--GCUUuc -5'
26421 5' -55.5 NC_005345.2 + 45335 0.69 0.489469
Target:  5'- -gCGAGCUgcuGCGCGGCcucgaucuGCCCgUCGAc-- -3'
miRNA:   3'- caGCUCGA---UGCGCCG--------UGGG-AGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 13494 0.68 0.520967
Target:  5'- cGUCGGuGCggugGCGCGGCgagcACCCgUCGAu-- -3'
miRNA:   3'- -CAGCU-CGa---UGCGCCG----UGGG-AGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 35831 0.68 0.520967
Target:  5'- uGUCGGGCgaggGCGCGGCgggugGCUCgguucgggCGggGGu -3'
miRNA:   3'- -CAGCUCGa---UGCGCCG-----UGGGa-------GCuuUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.