miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26421 5' -55.5 NC_005345.2 + 2036 0.68 0.553225
Target:  5'- cGUCGAGCgggcccgGCGCGGC-CCggCGGGc- -3'
miRNA:   3'- -CAGCUCGa------UGCGCCGuGGgaGCUUuc -5'
26421 5' -55.5 NC_005345.2 + 2352 0.67 0.629218
Target:  5'- -gCGuGCUugGCGGCGCagcccggucgcgaCCUCGcgGGc -3'
miRNA:   3'- caGCuCGAugCGCCGUG-------------GGAGCuuUC- -5'
26421 5' -55.5 NC_005345.2 + 2759 0.71 0.373817
Target:  5'- uGUgGAGCgcgccacGCGCGGCGgCCUCGGu-- -3'
miRNA:   3'- -CAgCUCGa------UGCGCCGUgGGAGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 3339 0.7 0.419765
Target:  5'- cUCGGGCUGCG-GGCGCCgcgUUCGAu-- -3'
miRNA:   3'- cAGCUCGAUGCgCCGUGG---GAGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 3378 0.74 0.234399
Target:  5'- -aCGAGCUgggcggcgagguccgGCGCGGCAuccCCCUCGAc-- -3'
miRNA:   3'- caGCUCGA---------------UGCGCCGU---GGGAGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 4132 0.72 0.307702
Target:  5'- uUCGAGCggcugcuCGCGGCGCUCgUCGAGc- -3'
miRNA:   3'- cAGCUCGau-----GCGCCGUGGG-AGCUUuc -5'
26421 5' -55.5 NC_005345.2 + 4749 0.66 0.66137
Target:  5'- -cCGGGCUcgacucggaccuCGaCGGCACCCUCGccGGc -3'
miRNA:   3'- caGCUCGAu-----------GC-GCCGUGGGAGCuuUC- -5'
26421 5' -55.5 NC_005345.2 + 4911 0.66 0.685619
Target:  5'- -cCGAGCUGCuGCGGCAgCCg------ -3'
miRNA:   3'- caGCUCGAUG-CGCCGUgGGagcuuuc -5'
26421 5' -55.5 NC_005345.2 + 5161 0.69 0.45889
Target:  5'- -aCGAGCgacuCGuCGcCGCCCUCGAAGGc -3'
miRNA:   3'- caGCUCGau--GC-GCcGUGGGAGCUUUC- -5'
26421 5' -55.5 NC_005345.2 + 6660 0.66 0.674621
Target:  5'- -aCGGGCgaACGUGGCGaucUCCUCGAc-- -3'
miRNA:   3'- caGCUCGa-UGCGCCGU---GGGAGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 9056 0.67 0.634767
Target:  5'- -cCGAGCagGCGCGGCGCCauugcugcccgcggUCGAcGGu -3'
miRNA:   3'- caGCUCGa-UGCGCCGUGGg-------------AGCUuUC- -5'
26421 5' -55.5 NC_005345.2 + 10486 0.71 0.38273
Target:  5'- -gUGAGCggcagAUGaaCGGCACCCUCGAcGGg -3'
miRNA:   3'- caGCUCGa----UGC--GCCGUGGGAGCUuUC- -5'
26421 5' -55.5 NC_005345.2 + 10606 0.66 0.652512
Target:  5'- -aCGAGCagcgGCGCGGCcggucgGCCCgggUCGAGc- -3'
miRNA:   3'- caGCUCGa---UGCGCCG------UGGG---AGCUUuc -5'
26421 5' -55.5 NC_005345.2 + 12029 0.66 0.674621
Target:  5'- -cCG-GCUACGUGGC-CCCUgcCGAGc- -3'
miRNA:   3'- caGCuCGAUGCGCCGuGGGA--GCUUuc -5'
26421 5' -55.5 NC_005345.2 + 12159 0.71 0.373817
Target:  5'- --gGAGCUGCGCacggGGCucgccGCCCUCGGAu- -3'
miRNA:   3'- cagCUCGAUGCG----CCG-----UGGGAGCUUuc -5'
26421 5' -55.5 NC_005345.2 + 12304 0.7 0.439079
Target:  5'- aUCGAGUgccccgagUGCGCGGCGCCgaUCGGu-- -3'
miRNA:   3'- cAGCUCG--------AUGCGCCGUGGg-AGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 12605 0.66 0.690005
Target:  5'- cGUCG-GCUACGCgcucggccgGGCACggcucgggcaccgggCCUCGGAGc -3'
miRNA:   3'- -CAGCuCGAUGCG---------CCGUG---------------GGAGCUUUc -5'
26421 5' -55.5 NC_005345.2 + 13494 0.68 0.520967
Target:  5'- cGUCGGuGCggugGCGCGGCgagcACCCgUCGAu-- -3'
miRNA:   3'- -CAGCU-CGa---UGCGCCG----UGGG-AGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 13661 0.74 0.238125
Target:  5'- -aCGAGCaGCGCGcCGCCCUCGAc-- -3'
miRNA:   3'- caGCUCGaUGCGCcGUGGGAGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 16882 0.67 0.586053
Target:  5'- -cCGAGCgugGCGgcggaaGGCGCCCgUCGAGGc -3'
miRNA:   3'- caGCUCGa--UGCg-----CCGUGGG-AGCUUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.