miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26421 5' -55.5 NC_005345.2 + 42084 1.1 0.000735
Target:  5'- cGUCGAGCUACGCGGCACCCUCGAAAGg -3'
miRNA:   3'- -CAGCUCGAUGCGCCGUGGGAGCUUUC- -5'
26421 5' -55.5 NC_005345.2 + 39328 0.67 0.57506
Target:  5'- cGUCGAGgaCUAUGaGGCAcCCCUCGGc-- -3'
miRNA:   3'- -CAGCUC--GAUGCgCCGU-GGGAGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 16882 0.67 0.586053
Target:  5'- -cCGAGCgugGCGgcggaaGGCGCCCgUCGAGGc -3'
miRNA:   3'- caGCUCGa--UGCg-----CCGUGGG-AGCUUUc -5'
26421 5' -55.5 NC_005345.2 + 12605 0.66 0.690005
Target:  5'- cGUCG-GCUACGCgcucggccgGGCACggcucgggcaccgggCCUCGGAGc -3'
miRNA:   3'- -CAGCuCGAUGCG---------CCGUG---------------GGAGCUUUc -5'
26421 5' -55.5 NC_005345.2 + 21129 0.73 0.278149
Target:  5'- cGUCGAGgcCUGCGCGcuccGCAUCCUCGAc-- -3'
miRNA:   3'- -CAGCUC--GAUGCGC----CGUGGGAGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 4132 0.72 0.307702
Target:  5'- uUCGAGCggcugcuCGCGGCGCUCgUCGAGc- -3'
miRNA:   3'- cAGCUCGau-----GCGCCGUGGG-AGCUUuc -5'
26421 5' -55.5 NC_005345.2 + 10486 0.71 0.38273
Target:  5'- -gUGAGCggcagAUGaaCGGCACCCUCGAcGGg -3'
miRNA:   3'- caGCUCGa----UGC--GCCGUGGGAGCUuUC- -5'
26421 5' -55.5 NC_005345.2 + 12304 0.7 0.439079
Target:  5'- aUCGAGUgccccgagUGCGCGGCGCCgaUCGGu-- -3'
miRNA:   3'- cAGCUCG--------AUGCGCCGUGGg-AGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 45335 0.69 0.489469
Target:  5'- -gCGAGCUgcuGCGCGGCcucgaucuGCCCgUCGAc-- -3'
miRNA:   3'- caGCUCGA---UGCGCCG--------UGGG-AGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 26994 0.67 0.57506
Target:  5'- uGUCGAGCcugcgggACGCGGaCGCggucgaguuCCUCGAucGg -3'
miRNA:   3'- -CAGCUCGa------UGCGCC-GUG---------GGAGCUuuC- -5'
26421 5' -55.5 NC_005345.2 + 46799 0.68 0.542399
Target:  5'- -cCGGGCUGCGCcgccaaGCACgCUCGGAc- -3'
miRNA:   3'- caGCUCGAUGCGc-----CGUGgGAGCUUuc -5'
26421 5' -55.5 NC_005345.2 + 19014 0.69 0.468972
Target:  5'- -aCGGGUgGCGCGcCGCCCUCGGGc- -3'
miRNA:   3'- caGCUCGaUGCGCcGUGGGAGCUUuc -5'
26421 5' -55.5 NC_005345.2 + 27145 0.78 0.130689
Target:  5'- cGUCGAGCUgcccgaggcgcuGCGCGGCGuCCCgcCGGAGGa -3'
miRNA:   3'- -CAGCUCGA------------UGCGCCGU-GGGa-GCUUUC- -5'
26421 5' -55.5 NC_005345.2 + 2036 0.68 0.553225
Target:  5'- cGUCGAGCgggcccgGCGCGGC-CCggCGGGc- -3'
miRNA:   3'- -CAGCUCGa------UGCGCCGuGGgaGCUUuc -5'
26421 5' -55.5 NC_005345.2 + 3378 0.74 0.234399
Target:  5'- -aCGAGCUgggcggcgagguccgGCGCGGCAuccCCCUCGAc-- -3'
miRNA:   3'- caGCUCGA---------------UGCGCCGU---GGGAGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 5161 0.69 0.45889
Target:  5'- -aCGAGCgacuCGuCGcCGCCCUCGAAGGc -3'
miRNA:   3'- caGCUCGau--GC-GCcGUGGGAGCUUUC- -5'
26421 5' -55.5 NC_005345.2 + 20039 0.68 0.560842
Target:  5'- --aGAGCagcCGCGGCggaugguucacggaGCCCUCGAAGc -3'
miRNA:   3'- cagCUCGau-GCGCCG--------------UGGGAGCUUUc -5'
26421 5' -55.5 NC_005345.2 + 45793 0.67 0.57506
Target:  5'- cUCGAuGCUccgcgcgaucgaACGCGGCGCCCgcagccCGAGu- -3'
miRNA:   3'- cAGCU-CGA------------UGCGCCGUGGGa-----GCUUuc -5'
26421 5' -55.5 NC_005345.2 + 13661 0.74 0.238125
Target:  5'- -aCGAGCaGCGCGcCGCCCUCGAc-- -3'
miRNA:   3'- caGCUCGaUGCGCcGUGGGAGCUuuc -5'
26421 5' -55.5 NC_005345.2 + 12159 0.71 0.373817
Target:  5'- --gGAGCUGCGCacggGGCucgccGCCCUCGGAu- -3'
miRNA:   3'- cagCUCGAUGCG----CCG-----UGGGAGCUUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.