miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26422 5' -57.8 NC_005345.2 + 42414 1.05 0.000857
Target:  5'- gAGUGACCUCACCGGCGGCAUACCGAUc -3'
miRNA:   3'- -UCACUGGAGUGGCCGCCGUAUGGCUA- -5'
26422 5' -57.8 NC_005345.2 + 21998 0.75 0.148643
Target:  5'- --gGGCCgcugcCGCaCGGCGGCAUGCCGGg -3'
miRNA:   3'- ucaCUGGa----GUG-GCCGCCGUAUGGCUa -5'
26422 5' -57.8 NC_005345.2 + 28108 0.73 0.200383
Target:  5'- --aGGCggUCGCCGGCGcGCGUGCCGAg -3'
miRNA:   3'- ucaCUGg-AGUGGCCGC-CGUAUGGCUa -5'
26422 5' -57.8 NC_005345.2 + 10541 0.73 0.205794
Target:  5'- -aUGACCUguCCGGCGGUG-GCCGAg -3'
miRNA:   3'- ucACUGGAguGGCCGCCGUaUGGCUa -5'
26422 5' -57.8 NC_005345.2 + 35945 0.71 0.247292
Target:  5'- gGGUGugCUCGCCGcGCGGgcUGCCGc- -3'
miRNA:   3'- -UCACugGAGUGGC-CGCCguAUGGCua -5'
26422 5' -57.8 NC_005345.2 + 12131 0.71 0.253757
Target:  5'- cGGUGcCgCUgAaaGGCGGCAUGCCGAg -3'
miRNA:   3'- -UCACuG-GAgUggCCGCCGUAUGGCUa -5'
26422 5' -57.8 NC_005345.2 + 15672 0.71 0.253757
Target:  5'- --cGACCUgCACCGuCGGCcgGCCGAUc -3'
miRNA:   3'- ucaCUGGA-GUGGCcGCCGuaUGGCUA- -5'
26422 5' -57.8 NC_005345.2 + 8715 0.71 0.253757
Target:  5'- uGUGGCCgacucguccgUCGCCGGCGGCgauccGUACgGAc -3'
miRNA:   3'- uCACUGG----------AGUGGCCGCCG-----UAUGgCUa -5'
26422 5' -57.8 NC_005345.2 + 3637 0.71 0.26036
Target:  5'- aGGUGuGCCguccgCAgcCCGGCGGCAgcgGCCGGg -3'
miRNA:   3'- -UCAC-UGGa----GU--GGCCGCCGUa--UGGCUa -5'
26422 5' -57.8 NC_005345.2 + 16122 0.71 0.26036
Target:  5'- cAGcGGCCg-GCCGGCGGCGUcCCGGc -3'
miRNA:   3'- -UCaCUGGagUGGCCGCCGUAuGGCUa -5'
26422 5' -57.8 NC_005345.2 + 37222 0.7 0.288175
Target:  5'- --cGcCCUCGCguguCGGCGGCGUGCCGu- -3'
miRNA:   3'- ucaCuGGAGUG----GCCGCCGUAUGGCua -5'
26422 5' -57.8 NC_005345.2 + 15883 0.7 0.302936
Target:  5'- uGUGAUCUUcuuCCGGCGuGCcAUGCCGGg -3'
miRNA:   3'- uCACUGGAGu--GGCCGC-CG-UAUGGCUa -5'
26422 5' -57.8 NC_005345.2 + 24915 0.7 0.310533
Target:  5'- --aGAUCUCACCGcGCGGCAgauagaugACCGu- -3'
miRNA:   3'- ucaCUGGAGUGGC-CGCCGUa-------UGGCua -5'
26422 5' -57.8 NC_005345.2 + 44901 0.7 0.318273
Target:  5'- cGUGGCCUCGCCcgcuccgcagcGGCgaccaucggcucGGCGUACCGc- -3'
miRNA:   3'- uCACUGGAGUGG-----------CCG------------CCGUAUGGCua -5'
26422 5' -57.8 NC_005345.2 + 11292 0.7 0.326158
Target:  5'- -cUGAgCCUCGCCGGCcGCG-ACCGAc -3'
miRNA:   3'- ucACU-GGAGUGGCCGcCGUaUGGCUa -5'
26422 5' -57.8 NC_005345.2 + 20493 0.7 0.326158
Target:  5'- cGGUGAUCUUGCCGaGCGGaAUGCCcGAc -3'
miRNA:   3'- -UCACUGGAGUGGC-CGCCgUAUGG-CUa -5'
26422 5' -57.8 NC_005345.2 + 13603 0.69 0.342359
Target:  5'- --cGACC-CGCCGGCGGUgc-CCGAg -3'
miRNA:   3'- ucaCUGGaGUGGCCGCCGuauGGCUa -5'
26422 5' -57.8 NC_005345.2 + 38289 0.69 0.365137
Target:  5'- cAGUGgcccgucgacuacuACCUCGCCGGCGGuCAcACCc-- -3'
miRNA:   3'- -UCAC--------------UGGAGUGGCCGCC-GUaUGGcua -5'
26422 5' -57.8 NC_005345.2 + 18227 0.69 0.367732
Target:  5'- cGUGAgCgggcCGCCGGCGGuCGUcACCGGg -3'
miRNA:   3'- uCACUgGa---GUGGCCGCC-GUA-UGGCUa -5'
26422 5' -57.8 NC_005345.2 + 34746 0.69 0.367732
Target:  5'- gGGUGAuCCUCGCggCGGCGGCGgugacgcgcggcUACgCGAUc -3'
miRNA:   3'- -UCACU-GGAGUG--GCCGCCGU------------AUG-GCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.