miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26422 5' -57.8 NC_005345.2 + 42414 1.05 0.000857
Target:  5'- gAGUGACCUCACCGGCGGCAUACCGAUc -3'
miRNA:   3'- -UCACUGGAGUGGCCGCCGUAUGGCUA- -5'
26422 5' -57.8 NC_005345.2 + 32502 0.67 0.471154
Target:  5'- cGGUGccgucCCUCuGCCGGCGGgCGgcCCGAUc -3'
miRNA:   3'- -UCACu----GGAG-UGGCCGCC-GUauGGCUA- -5'
26422 5' -57.8 NC_005345.2 + 25706 0.66 0.491521
Target:  5'- cGUGACCgguCCGGaCGGCGaacCCGAc -3'
miRNA:   3'- uCACUGGaguGGCC-GCCGUau-GGCUa -5'
26422 5' -57.8 NC_005345.2 + 13038 0.66 0.521748
Target:  5'- cGGcGACCggaUCACCGGCagcGGCAUcguguggACCGGa -3'
miRNA:   3'- -UCaCUGG---AGUGGCCG---CCGUA-------UGGCUa -5'
26422 5' -57.8 NC_005345.2 + 12131 0.71 0.253757
Target:  5'- cGGUGcCgCUgAaaGGCGGCAUGCCGAg -3'
miRNA:   3'- -UCACuG-GAgUggCCGCCGUAUGGCUa -5'
26422 5' -57.8 NC_005345.2 + 13603 0.69 0.342359
Target:  5'- --cGACC-CGCCGGCGGUgc-CCGAg -3'
miRNA:   3'- ucaCUGGaGUGGCCGCCGuauGGCUa -5'
26422 5' -57.8 NC_005345.2 + 34746 0.69 0.367732
Target:  5'- gGGUGAuCCUCGCggCGGCGGCGgugacgcgcggcUACgCGAUc -3'
miRNA:   3'- -UCACU-GGAGUG--GCCGCCGU------------AUG-GCUA- -5'
26422 5' -57.8 NC_005345.2 + 41306 0.69 0.3686
Target:  5'- cGGUG-CCggCGCCGGCGGCuggacgcccuacacGCCGAc -3'
miRNA:   3'- -UCACuGGa-GUGGCCGCCGua------------UGGCUa -5'
26422 5' -57.8 NC_005345.2 + 1209 0.67 0.451224
Target:  5'- gGGUGAUCUCGCCacgcuucgGGuCGGCGUACg--- -3'
miRNA:   3'- -UCACUGGAGUGG--------CC-GCCGUAUGgcua -5'
26422 5' -57.8 NC_005345.2 + 19006 0.67 0.471154
Target:  5'- --cGACCUCgACgGGUGGCGcGCCGc- -3'
miRNA:   3'- ucaCUGGAG-UGgCCGCCGUaUGGCua -5'
26422 5' -57.8 NC_005345.2 + 30918 0.67 0.461132
Target:  5'- cGGUGACgacCGCCGGCGGCcgcucacgGUGCaCGGc -3'
miRNA:   3'- -UCACUGga-GUGGCCGCCG--------UAUG-GCUa -5'
26422 5' -57.8 NC_005345.2 + 28988 0.68 0.403519
Target:  5'- aGGUGaaccgcuuccGCCUCGCgCGGUGGCuc-CCGAa -3'
miRNA:   3'- -UCAC----------UGGAGUG-GCCGCCGuauGGCUa -5'
26422 5' -57.8 NC_005345.2 + 21998 0.75 0.148643
Target:  5'- --gGGCCgcugcCGCaCGGCGGCAUGCCGGg -3'
miRNA:   3'- ucaCUGGa----GUG-GCCGCCGUAUGGCUa -5'
26422 5' -57.8 NC_005345.2 + 5394 0.67 0.471154
Target:  5'- gAGUccaCUCAggcCCGGCGGUcgGCCGAg -3'
miRNA:   3'- -UCAcugGAGU---GGCCGCCGuaUGGCUa -5'
26422 5' -57.8 NC_005345.2 + 28108 0.73 0.200383
Target:  5'- --aGGCggUCGCCGGCGcGCGUGCCGAg -3'
miRNA:   3'- ucaCUGg-AGUGGCCGC-CGUAUGGCUa -5'
26422 5' -57.8 NC_005345.2 + 40615 0.69 0.376472
Target:  5'- gGGUGuACCUCuCCGcgagccGCGGCAUGgCGAg -3'
miRNA:   3'- -UCAC-UGGAGuGGC------CGCCGUAUgGCUa -5'
26422 5' -57.8 NC_005345.2 + 13453 0.67 0.471154
Target:  5'- cGGcGACgUCGCCGaCGGCGUGCUGu- -3'
miRNA:   3'- -UCaCUGgAGUGGCcGCCGUAUGGCua -5'
26422 5' -57.8 NC_005345.2 + 42511 0.67 0.471154
Target:  5'- cGUGcCCUCuCCGcGCGGCucggcACCGAc -3'
miRNA:   3'- uCACuGGAGuGGC-CGCCGua---UGGCUa -5'
26422 5' -57.8 NC_005345.2 + 8715 0.71 0.253757
Target:  5'- uGUGGCCgacucguccgUCGCCGGCGGCgauccGUACgGAc -3'
miRNA:   3'- uCACUGG----------AGUGGCCGCCG-----UAUGgCUa -5'
26422 5' -57.8 NC_005345.2 + 38289 0.69 0.365137
Target:  5'- cAGUGgcccgucgacuacuACCUCGCCGGCGGuCAcACCc-- -3'
miRNA:   3'- -UCAC--------------UGGAGUGGCCGCC-GUaUGGcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.