miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26422 5' -57.8 NC_005345.2 + 41584 0.66 0.512286
Target:  5'- uGUG-CCgaaUCACUGGCGGCGU-CgGAUa -3'
miRNA:   3'- uCACuGG---AGUGGCCGCCGUAuGgCUA- -5'
26422 5' -57.8 NC_005345.2 + 41306 0.69 0.3686
Target:  5'- cGGUG-CCggCGCCGGCGGCuggacgcccuacacGCCGAc -3'
miRNA:   3'- -UCACuGGa-GUGGCCGCCGua------------UGGCUa -5'
26422 5' -57.8 NC_005345.2 + 32502 0.67 0.471154
Target:  5'- cGGUGccgucCCUCuGCCGGCGGgCGgcCCGAUc -3'
miRNA:   3'- -UCACu----GGAG-UGGCCGCC-GUauGGCUA- -5'
26422 5' -57.8 NC_005345.2 + 1657 0.66 0.501856
Target:  5'- gGGUGACCguguuuCCaGCGGCGUcguacgGCCGGa -3'
miRNA:   3'- -UCACUGGagu---GGcCGCCGUA------UGGCUa -5'
26422 5' -57.8 NC_005345.2 + 27851 0.66 0.512286
Target:  5'- uGUGGCCgaUCcUCGGCGGCGcccCCGAc -3'
miRNA:   3'- uCACUGG--AGuGGCCGCCGUau-GGCUa -5'
26422 5' -57.8 NC_005345.2 + 5394 0.67 0.471154
Target:  5'- gAGUccaCUCAggcCCGGCGGUcgGCCGAg -3'
miRNA:   3'- -UCAcugGAGU---GGCCGCCGuaUGGCUa -5'
26422 5' -57.8 NC_005345.2 + 42511 0.67 0.471154
Target:  5'- cGUGcCCUCuCCGcGCGGCucggcACCGAc -3'
miRNA:   3'- uCACuGGAGuGGC-CGCCGua---UGGCUa -5'
26422 5' -57.8 NC_005345.2 + 10541 0.73 0.205794
Target:  5'- -aUGACCUguCCGGCGGUG-GCCGAg -3'
miRNA:   3'- ucACUGGAguGGCCGCCGUaUGGCUa -5'
26422 5' -57.8 NC_005345.2 + 28591 0.66 0.522804
Target:  5'- uGUGACCgaccgcaCACCGaauCGcGCAUGCCGGg -3'
miRNA:   3'- uCACUGGa------GUGGCc--GC-CGUAUGGCUa -5'
26422 5' -57.8 NC_005345.2 + 38783 0.68 0.385351
Target:  5'- -uUGuCCUCGCCGuCGGCGUGCCc-- -3'
miRNA:   3'- ucACuGGAGUGGCcGCCGUAUGGcua -5'
26422 5' -57.8 NC_005345.2 + 21977 0.68 0.394368
Target:  5'- cGGUaGACCUCcuCCGGCGGgAcGCCGc- -3'
miRNA:   3'- -UCA-CUGGAGu-GGCCGCCgUaUGGCua -5'
26422 5' -57.8 NC_005345.2 + 42751 0.67 0.471154
Target:  5'- --gGACCggCAcCCGGCGGU-UGCCGGg -3'
miRNA:   3'- ucaCUGGa-GU-GGCCGCCGuAUGGCUa -5'
26422 5' -57.8 NC_005345.2 + 37222 0.7 0.288175
Target:  5'- --cGcCCUCGCguguCGGCGGCGUGCCGu- -3'
miRNA:   3'- ucaCuGGAGUG----GCCGCCGUAUGGCua -5'
26422 5' -57.8 NC_005345.2 + 757 0.67 0.448274
Target:  5'- --gGugCUCgugggauagccccgGCCGGCGGCGggggaUGCCGAc -3'
miRNA:   3'- ucaCugGAG--------------UGGCCGCCGU-----AUGGCUa -5'
26422 5' -57.8 NC_005345.2 + 16122 0.71 0.26036
Target:  5'- cAGcGGCCg-GCCGGCGGCGUcCCGGc -3'
miRNA:   3'- -UCaCUGGagUGGCCGCCGUAuGGCUa -5'
26422 5' -57.8 NC_005345.2 + 3637 0.71 0.26036
Target:  5'- aGGUGuGCCguccgCAgcCCGGCGGCAgcgGCCGGg -3'
miRNA:   3'- -UCAC-UGGa----GU--GGCCGCCGUa--UGGCUa -5'
26422 5' -57.8 NC_005345.2 + 15672 0.71 0.253757
Target:  5'- --cGACCUgCACCGuCGGCcgGCCGAUc -3'
miRNA:   3'- ucaCUGGA-GUGGCcGCCGuaUGGCUA- -5'
26422 5' -57.8 NC_005345.2 + 35945 0.71 0.247292
Target:  5'- gGGUGugCUCGCCGcGCGGgcUGCCGc- -3'
miRNA:   3'- -UCACugGAGUGGC-CGCCguAUGGCua -5'
26422 5' -57.8 NC_005345.2 + 30771 0.68 0.422221
Target:  5'- gGGUGugUUCAUCGGgGGUGUACUc-- -3'
miRNA:   3'- -UCACugGAGUGGCCgCCGUAUGGcua -5'
26422 5' -57.8 NC_005345.2 + 45441 0.68 0.412805
Target:  5'- cAGcUGcACCUCGCCGcCGGCG-GCCGAg -3'
miRNA:   3'- -UC-AC-UGGAGUGGCcGCCGUaUGGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.