miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26422 5' -57.8 NC_005345.2 + 47879 0.67 0.460136
Target:  5'- cGGUGACgUCgGCCGGCGuGCuguggucGUGCCGc- -3'
miRNA:   3'- -UCACUGgAG-UGGCCGC-CG-------UAUGGCua -5'
26422 5' -57.8 NC_005345.2 + 1209 0.67 0.451224
Target:  5'- gGGUGAUCUCGCCacgcuucgGGuCGGCGUACg--- -3'
miRNA:   3'- -UCACUGGAGUGG--------CC-GCCGUAUGgcua -5'
26422 5' -57.8 NC_005345.2 + 757 0.67 0.448274
Target:  5'- --gGugCUCgugggauagccccgGCCGGCGGCGggggaUGCCGAc -3'
miRNA:   3'- ucaCugGAG--------------UGGCCGCCGU-----AUGGCUa -5'
26422 5' -57.8 NC_005345.2 + 2894 0.67 0.431764
Target:  5'- cGGUGGCCUCGacgagCGGauCGGCGgACCGGg -3'
miRNA:   3'- -UCACUGGAGUg----GCC--GCCGUaUGGCUa -5'
26422 5' -57.8 NC_005345.2 + 40606 0.67 0.431764
Target:  5'- --gGACgUCAUCaGCGGCGUGCCcGAa -3'
miRNA:   3'- ucaCUGgAGUGGcCGCCGUAUGG-CUa -5'
26422 5' -57.8 NC_005345.2 + 39330 0.67 0.431764
Target:  5'- -cUGAUCgggCAUCGGCGGCAccgGCCGc- -3'
miRNA:   3'- ucACUGGa--GUGGCCGCCGUa--UGGCua -5'
26422 5' -57.8 NC_005345.2 + 43357 0.67 0.430804
Target:  5'- --cGACCUCggggucgGCCGGguaCGGCAcGCCGAg -3'
miRNA:   3'- ucaCUGGAG-------UGGCC---GCCGUaUGGCUa -5'
26422 5' -57.8 NC_005345.2 + 30771 0.68 0.422221
Target:  5'- gGGUGugUUCAUCGGgGGUGUACUc-- -3'
miRNA:   3'- -UCACugGAGUGGCCgCCGUAUGGcua -5'
26422 5' -57.8 NC_005345.2 + 45441 0.68 0.412805
Target:  5'- cAGcUGcACCUCGCCGcCGGCG-GCCGAg -3'
miRNA:   3'- -UC-AC-UGGAGUGGCcGCCGUaUGGCUa -5'
26422 5' -57.8 NC_005345.2 + 28988 0.68 0.403519
Target:  5'- aGGUGaaccgcuuccGCCUCGCgCGGUGGCuc-CCGAa -3'
miRNA:   3'- -UCAC----------UGGAGUG-GCCGCCGuauGGCUa -5'
26422 5' -57.8 NC_005345.2 + 21977 0.68 0.394368
Target:  5'- cGGUaGACCUCcuCCGGCGGgAcGCCGc- -3'
miRNA:   3'- -UCA-CUGGAGu-GGCCGCCgUaUGGCua -5'
26422 5' -57.8 NC_005345.2 + 38783 0.68 0.385351
Target:  5'- -uUGuCCUCGCCGuCGGCGUGCCc-- -3'
miRNA:   3'- ucACuGGAGUGGCcGCCGUAUGGcua -5'
26422 5' -57.8 NC_005345.2 + 40615 0.69 0.376472
Target:  5'- gGGUGuACCUCuCCGcgagccGCGGCAUGgCGAg -3'
miRNA:   3'- -UCAC-UGGAGuGGC------CGCCGUAUgGCUa -5'
26422 5' -57.8 NC_005345.2 + 41306 0.69 0.3686
Target:  5'- cGGUG-CCggCGCCGGCGGCuggacgcccuacacGCCGAc -3'
miRNA:   3'- -UCACuGGa-GUGGCCGCCGua------------UGGCUa -5'
26422 5' -57.8 NC_005345.2 + 34746 0.69 0.367732
Target:  5'- gGGUGAuCCUCGCggCGGCGGCGgugacgcgcggcUACgCGAUc -3'
miRNA:   3'- -UCACU-GGAGUG--GCCGCCGU------------AUG-GCUA- -5'
26422 5' -57.8 NC_005345.2 + 18227 0.69 0.367732
Target:  5'- cGUGAgCgggcCGCCGGCGGuCGUcACCGGg -3'
miRNA:   3'- uCACUgGa---GUGGCCGCC-GUA-UGGCUa -5'
26422 5' -57.8 NC_005345.2 + 38289 0.69 0.365137
Target:  5'- cAGUGgcccgucgacuacuACCUCGCCGGCGGuCAcACCc-- -3'
miRNA:   3'- -UCAC--------------UGGAGUGGCCGCC-GUaUGGcua -5'
26422 5' -57.8 NC_005345.2 + 13603 0.69 0.342359
Target:  5'- --cGACC-CGCCGGCGGUgc-CCGAg -3'
miRNA:   3'- ucaCUGGaGUGGCCGCCGuauGGCUa -5'
26422 5' -57.8 NC_005345.2 + 20493 0.7 0.326158
Target:  5'- cGGUGAUCUUGCCGaGCGGaAUGCCcGAc -3'
miRNA:   3'- -UCACUGGAGUGGC-CGCCgUAUGG-CUa -5'
26422 5' -57.8 NC_005345.2 + 11292 0.7 0.326158
Target:  5'- -cUGAgCCUCGCCGGCcGCG-ACCGAc -3'
miRNA:   3'- ucACU-GGAGUGGCCGcCGUaUGGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.