miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26423 3' -54.5 NC_005345.2 + 22006 0.66 0.719965
Target:  5'- gCCGCACGgcgGCAUgccGGGcCCGCcgGACGg -3'
miRNA:   3'- aGGCGUGUag-UGUA---CCCuGGCG--UUGC- -5'
26423 3' -54.5 NC_005345.2 + 22387 0.67 0.676213
Target:  5'- gCCGCACccgCGCcgGGGACuCGUcgaguuccucGGCGa -3'
miRNA:   3'- aGGCGUGua-GUGuaCCCUG-GCG----------UUGC- -5'
26423 3' -54.5 NC_005345.2 + 24130 0.73 0.31558
Target:  5'- gUCGUACGUCGCGaacgccucGGcGACCGCGGCGa -3'
miRNA:   3'- aGGCGUGUAGUGUa-------CC-CUGGCGUUGC- -5'
26423 3' -54.5 NC_005345.2 + 24293 0.69 0.532695
Target:  5'- gUCGCGucCGUCACGccgcGGGACCGCuugcGCGa -3'
miRNA:   3'- aGGCGU--GUAGUGUa---CCCUGGCGu---UGC- -5'
26423 3' -54.5 NC_005345.2 + 26818 0.72 0.401454
Target:  5'- cCCGCGCccccaCACGUGcagacccgaaccGGACCGCGACa -3'
miRNA:   3'- aGGCGUGua---GUGUAC------------CCUGGCGUUGc -5'
26423 3' -54.5 NC_005345.2 + 30038 0.67 0.665139
Target:  5'- aUCgGCGCccaCGCGUGGG-CCGaCGACa -3'
miRNA:   3'- -AGgCGUGua-GUGUACCCuGGC-GUUGc -5'
26423 3' -54.5 NC_005345.2 + 31003 0.66 0.751883
Target:  5'- gCUGUACccgaCGCcgGGGAUCGgGACGa -3'
miRNA:   3'- aGGCGUGua--GUGuaCCCUGGCgUUGC- -5'
26423 3' -54.5 NC_005345.2 + 31541 0.66 0.69822
Target:  5'- -gCGUGCAUCACAgccccuUGGG-CCGCGggcagaugGCGg -3'
miRNA:   3'- agGCGUGUAGUGU------ACCCuGGCGU--------UGC- -5'
26423 3' -54.5 NC_005345.2 + 31613 0.67 0.641795
Target:  5'- cCCGCGgAUCGCAUGGcGACaCGguccucgcccggcCGGCGa -3'
miRNA:   3'- aGGCGUgUAGUGUACC-CUG-GC-------------GUUGC- -5'
26423 3' -54.5 NC_005345.2 + 31876 0.7 0.490337
Target:  5'- cCCGCGCG-CAgAccaGGACCGCGGCGc -3'
miRNA:   3'- aGGCGUGUaGUgUac-CCUGGCGUUGC- -5'
26423 3' -54.5 NC_005345.2 + 34829 0.68 0.576293
Target:  5'- aUCgGCcugauCAUCACc-GGGAUCGCGGCGc -3'
miRNA:   3'- -AGgCGu----GUAGUGuaCCCUGGCGUUGC- -5'
26423 3' -54.5 NC_005345.2 + 35175 0.69 0.565303
Target:  5'- gUCgGCGCucaagccCGCGUucgacGGGAUCGCAGCGg -3'
miRNA:   3'- -AGgCGUGua-----GUGUA-----CCCUGGCGUUGC- -5'
26423 3' -54.5 NC_005345.2 + 37998 0.71 0.459622
Target:  5'- gCCGagcuugGCAUCACGUGGucacugguGGCCGCGugGa -3'
miRNA:   3'- aGGCg-----UGUAGUGUACC--------CUGGCGUugC- -5'
26423 3' -54.5 NC_005345.2 + 38869 0.75 0.26418
Target:  5'- cCCGCGCcgCAUcuccucgGGGAUCGCGGCGu -3'
miRNA:   3'- aGGCGUGuaGUGua-----CCCUGGCGUUGC- -5'
26423 3' -54.5 NC_005345.2 + 39642 0.73 0.31558
Target:  5'- gUCUGCGCG-CACA-GGGcCCGCGACu -3'
miRNA:   3'- -AGGCGUGUaGUGUaCCCuGGCGUUGc -5'
26423 3' -54.5 NC_005345.2 + 40464 0.67 0.665139
Target:  5'- gCCGCccACGUCACGgccaccGCCGCGGCGa -3'
miRNA:   3'- aGGCG--UGUAGUGUaccc--UGGCGUUGC- -5'
26423 3' -54.5 NC_005345.2 + 41667 0.69 0.554368
Target:  5'- cCCGcCACucccuUCACGUGGGcuACCgGCGACu -3'
miRNA:   3'- aGGC-GUGu----AGUGUACCC--UGG-CGUUGc -5'
26423 3' -54.5 NC_005345.2 + 42120 0.7 0.511334
Target:  5'- --aGCGCcguUCACGaagGGGACCGCAcucACGg -3'
miRNA:   3'- aggCGUGu--AGUGUa--CCCUGGCGU---UGC- -5'
26423 3' -54.5 NC_005345.2 + 42765 1.09 0.001133
Target:  5'- uUCCGCACAUCACAUGGGACCGCAACGc -3'
miRNA:   3'- -AGGCGUGUAGUGUACCCUGGCGUUGC- -5'
26423 3' -54.5 NC_005345.2 + 44217 0.66 0.730709
Target:  5'- aCCGCcacccggccggaGCG-CACGUGcGGcuGCCGCAGCa -3'
miRNA:   3'- aGGCG------------UGUaGUGUAC-CC--UGGCGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.