miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26423 3' -54.5 NC_005345.2 + 875 0.66 0.719965
Target:  5'- cCCGaCGCAUCGCA-GGGaACgGCGucuCGa -3'
miRNA:   3'- aGGC-GUGUAGUGUaCCC-UGgCGUu--GC- -5'
26423 3' -54.5 NC_005345.2 + 2047 0.66 0.709131
Target:  5'- cCCgGCGCggC-CcgGcGGGCCGCGGCGa -3'
miRNA:   3'- aGG-CGUGuaGuGuaC-CCUGGCGUUGC- -5'
26423 3' -54.5 NC_005345.2 + 2517 0.7 0.499737
Target:  5'- uUCCGCugGCAUCgACGUGGGGgguuuccacgcggUgGCGACGg -3'
miRNA:   3'- -AGGCG--UGUAG-UGUACCCU-------------GgCGUUGC- -5'
26423 3' -54.5 NC_005345.2 + 3797 0.68 0.598406
Target:  5'- gCCGCACGgucCACAccGGugCGaCGACGg -3'
miRNA:   3'- aGGCGUGUa--GUGUacCCugGC-GUUGC- -5'
26423 3' -54.5 NC_005345.2 + 5634 0.66 0.741353
Target:  5'- cUCCGCGag-CGCcgGGuucGCCGCGACc -3'
miRNA:   3'- -AGGCGUguaGUGuaCCc--UGGCGUUGc -5'
26423 3' -54.5 NC_005345.2 + 6883 0.66 0.730709
Target:  5'- gCCGCug--CGCAUGuGGAUCgaGCAGCGa -3'
miRNA:   3'- aGGCGuguaGUGUAC-CCUGG--CGUUGC- -5'
26423 3' -54.5 NC_005345.2 + 9084 0.66 0.751883
Target:  5'- gCCGC-CGUCGCcgGcGACCGCccgcACGu -3'
miRNA:   3'- aGGCGuGUAGUGuaCcCUGGCGu---UGC- -5'
26423 3' -54.5 NC_005345.2 + 9722 0.71 0.439724
Target:  5'- gCCGCGCcgCGC---GGGCCGCGACc -3'
miRNA:   3'- aGGCGUGuaGUGuacCCUGGCGUUGc -5'
26423 3' -54.5 NC_005345.2 + 12374 0.66 0.69822
Target:  5'- cCCGaCGCcUCGCAgcggagGGGAagGCAGCGg -3'
miRNA:   3'- aGGC-GUGuAGUGUa-----CCCUggCGUUGC- -5'
26423 3' -54.5 NC_005345.2 + 12764 0.66 0.751883
Target:  5'- gCCGCgGCAgacguggcgCGCGUGGaccacCCGCAACGa -3'
miRNA:   3'- aGGCG-UGUa--------GUGUACCcu---GGCGUUGC- -5'
26423 3' -54.5 NC_005345.2 + 13226 0.7 0.469749
Target:  5'- cCCGCgccccgGCGUCACGUGGaugacGACCGuCGGCa -3'
miRNA:   3'- aGGCG------UGUAGUGUACC-----CUGGC-GUUGc -5'
26423 3' -54.5 NC_005345.2 + 13709 0.73 0.348187
Target:  5'- gCgGCGaguUCACAUGGGACCcCGACGc -3'
miRNA:   3'- aGgCGUgu-AGUGUACCCUGGcGUUGC- -5'
26423 3' -54.5 NC_005345.2 + 14135 0.68 0.576293
Target:  5'- cCCGC-CccCACGUGGccGCCGCAGCGc -3'
miRNA:   3'- aGGCGuGuaGUGUACCc-UGGCGUUGC- -5'
26423 3' -54.5 NC_005345.2 + 14345 0.67 0.687243
Target:  5'- -gCGCACG--GCGUGcgcgaGGACCGCGACc -3'
miRNA:   3'- agGCGUGUagUGUAC-----CCUGGCGUUGc -5'
26423 3' -54.5 NC_005345.2 + 14393 0.67 0.654034
Target:  5'- gCCGCGCGUCACcgcc-GCCGCcGCGa -3'
miRNA:   3'- aGGCGUGUAGUGuacccUGGCGuUGC- -5'
26423 3' -54.5 NC_005345.2 + 14880 0.66 0.727496
Target:  5'- aCCGCGCgcagccggucaaggGUCAgGUcGaGGACCGCGuucGCGg -3'
miRNA:   3'- aGGCGUG--------------UAGUgUA-C-CCUGGCGU---UGC- -5'
26423 3' -54.5 NC_005345.2 + 15766 0.66 0.730709
Target:  5'- gCUGCAUcgUAUccGGGGCCGCGcCa -3'
miRNA:   3'- aGGCGUGuaGUGuaCCCUGGCGUuGc -5'
26423 3' -54.5 NC_005345.2 + 17930 0.66 0.751883
Target:  5'- gCCGUACAcccggccgCACccGGGugCGCAcccGCGc -3'
miRNA:   3'- aGGCGUGUa-------GUGuaCCCugGCGU---UGC- -5'
26423 3' -54.5 NC_005345.2 + 19124 0.67 0.676213
Target:  5'- aCCGCAUgGUgGC-UGcGGGCCGCAugGc -3'
miRNA:   3'- aGGCGUG-UAgUGuAC-CCUGGCGUugC- -5'
26423 3' -54.5 NC_005345.2 + 19910 0.66 0.719965
Target:  5'- gCUGCGCAUCGC--GGGcgaugaACgGCAGCGc -3'
miRNA:   3'- aGGCGUGUAGUGuaCCC------UGgCGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.