Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26423 | 3' | -54.5 | NC_005345.2 | + | 9722 | 0.71 | 0.439724 |
Target: 5'- gCCGCGCcgCGC---GGGCCGCGACc -3' miRNA: 3'- aGGCGUGuaGUGuacCCUGGCGUUGc -5' |
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26423 | 3' | -54.5 | NC_005345.2 | + | 12374 | 0.66 | 0.69822 |
Target: 5'- cCCGaCGCcUCGCAgcggagGGGAagGCAGCGg -3' miRNA: 3'- aGGC-GUGuAGUGUa-----CCCUggCGUUGC- -5' |
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26423 | 3' | -54.5 | NC_005345.2 | + | 22006 | 0.66 | 0.719965 |
Target: 5'- gCCGCACGgcgGCAUgccGGGcCCGCcgGACGg -3' miRNA: 3'- aGGCGUGUag-UGUA---CCCuGGCG--UUGC- -5' |
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26423 | 3' | -54.5 | NC_005345.2 | + | 9084 | 0.66 | 0.751883 |
Target: 5'- gCCGC-CGUCGCcgGcGACCGCccgcACGu -3' miRNA: 3'- aGGCGuGUAGUGuaCcCUGGCGu---UGC- -5' |
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26423 | 3' | -54.5 | NC_005345.2 | + | 42120 | 0.7 | 0.511334 |
Target: 5'- --aGCGCcguUCACGaagGGGACCGCAcucACGg -3' miRNA: 3'- aggCGUGu--AGUGUa--CCCUGGCGU---UGC- -5' |
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26423 | 3' | -54.5 | NC_005345.2 | + | 41667 | 0.69 | 0.554368 |
Target: 5'- cCCGcCACucccuUCACGUGGGcuACCgGCGACu -3' miRNA: 3'- aGGC-GUGu----AGUGUACCC--UGG-CGUUGc -5' |
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26423 | 3' | -54.5 | NC_005345.2 | + | 34829 | 0.68 | 0.576293 |
Target: 5'- aUCgGCcugauCAUCACc-GGGAUCGCGGCGc -3' miRNA: 3'- -AGgCGu----GUAGUGuaCCCUGGCGUUGC- -5' |
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26423 | 3' | -54.5 | NC_005345.2 | + | 42765 | 1.09 | 0.001133 |
Target: 5'- uUCCGCACAUCACAUGGGACCGCAACGc -3' miRNA: 3'- -AGGCGUGUAGUGUACCCUGGCGUUGC- -5' |
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26423 | 3' | -54.5 | NC_005345.2 | + | 13709 | 0.73 | 0.348187 |
Target: 5'- gCgGCGaguUCACAUGGGACCcCGACGc -3' miRNA: 3'- aGgCGUgu-AGUGUACCCUGGcGUUGC- -5' |
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26423 | 3' | -54.5 | NC_005345.2 | + | 14345 | 0.67 | 0.687243 |
Target: 5'- -gCGCACG--GCGUGcgcgaGGACCGCGACc -3' miRNA: 3'- agGCGUGUagUGUAC-----CCUGGCGUUGc -5' |
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26423 | 3' | -54.5 | NC_005345.2 | + | 31613 | 0.67 | 0.641795 |
Target: 5'- cCCGCGgAUCGCAUGGcGACaCGguccucgcccggcCGGCGa -3' miRNA: 3'- aGGCGUgUAGUGUACC-CUG-GC-------------GUUGC- -5' |
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26423 | 3' | -54.5 | NC_005345.2 | + | 3797 | 0.68 | 0.598406 |
Target: 5'- gCCGCACGgucCACAccGGugCGaCGACGg -3' miRNA: 3'- aGGCGUGUa--GUGUacCCugGC-GUUGC- -5' |
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26423 | 3' | -54.5 | NC_005345.2 | + | 37998 | 0.71 | 0.459622 |
Target: 5'- gCCGagcuugGCAUCACGUGGucacugguGGCCGCGugGa -3' miRNA: 3'- aGGCg-----UGUAGUGUACC--------CUGGCGUugC- -5' |
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26423 | 3' | -54.5 | NC_005345.2 | + | 30038 | 0.67 | 0.665139 |
Target: 5'- aUCgGCGCccaCGCGUGGG-CCGaCGACa -3' miRNA: 3'- -AGgCGUGua-GUGUACCCuGGC-GUUGc -5' |
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26423 | 3' | -54.5 | NC_005345.2 | + | 13226 | 0.7 | 0.469749 |
Target: 5'- cCCGCgccccgGCGUCACGUGGaugacGACCGuCGGCa -3' miRNA: 3'- aGGCG------UGUAGUGUACC-----CUGGC-GUUGc -5' |
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26423 | 3' | -54.5 | NC_005345.2 | + | 14135 | 0.68 | 0.576293 |
Target: 5'- cCCGC-CccCACGUGGccGCCGCAGCGc -3' miRNA: 3'- aGGCGuGuaGUGUACCc-UGGCGUUGC- -5' |
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26423 | 3' | -54.5 | NC_005345.2 | + | 19124 | 0.67 | 0.676213 |
Target: 5'- aCCGCAUgGUgGC-UGcGGGCCGCAugGc -3' miRNA: 3'- aGGCGUG-UAgUGuAC-CCUGGCGUugC- -5' |
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26423 | 3' | -54.5 | NC_005345.2 | + | 2047 | 0.66 | 0.709131 |
Target: 5'- cCCgGCGCggC-CcgGcGGGCCGCGGCGa -3' miRNA: 3'- aGG-CGUGuaGuGuaC-CCUGGCGUUGC- -5' |
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26423 | 3' | -54.5 | NC_005345.2 | + | 31876 | 0.7 | 0.490337 |
Target: 5'- cCCGCGCG-CAgAccaGGACCGCGGCGc -3' miRNA: 3'- aGGCGUGUaGUgUac-CCUGGCGUUGC- -5' |
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26423 | 3' | -54.5 | NC_005345.2 | + | 35175 | 0.69 | 0.565303 |
Target: 5'- gUCgGCGCucaagccCGCGUucgacGGGAUCGCAGCGg -3' miRNA: 3'- -AGgCGUGua-----GUGUA-----CCCUGGCGUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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