miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26423 5' -62 NC_005345.2 + 10252 0.67 0.290787
Target:  5'- gGUCAcCCgGGCGCCGauCUC-UGCCGUc -3'
miRNA:   3'- -CGGUuGGgCCGCGGC--GAGcACGGCAu -5'
26423 5' -62 NC_005345.2 + 10769 0.67 0.290083
Target:  5'- uGCCu-CCCGGgaguugcUGCCGCUUGcucgGCCGUc -3'
miRNA:   3'- -CGGuuGGGCC-------GCGGCGAGCa---CGGCAu -5'
26423 5' -62 NC_005345.2 + 43973 0.67 0.283799
Target:  5'- -gCAGCCCGGCGgcucgcCCGaCUCGUcgGCCGc- -3'
miRNA:   3'- cgGUUGGGCCGC------GGC-GAGCA--CGGCau -5'
26423 5' -62 NC_005345.2 + 30997 0.67 0.283799
Target:  5'- gGCCcGCCCGGUcCgGCcuaCGUGCCGa- -3'
miRNA:   3'- -CGGuUGGGCCGcGgCGa--GCACGGCau -5'
26423 5' -62 NC_005345.2 + 21000 0.67 0.283799
Target:  5'- cGCCGACCgGGCGaCgCGUUCGccgGCCc-- -3'
miRNA:   3'- -CGGUUGGgCCGC-G-GCGAGCa--CGGcau -5'
26423 5' -62 NC_005345.2 + 16636 0.67 0.283108
Target:  5'- cGCCGucACuCCGGUGCUGUUCGUcaucacggucgagGCCGc- -3'
miRNA:   3'- -CGGU--UG-GGCCGCGGCGAGCA-------------CGGCau -5'
26423 5' -62 NC_005345.2 + 41073 0.67 0.276945
Target:  5'- -gCAGCCCGGcCGCCuGCUCG-GCgGc- -3'
miRNA:   3'- cgGUUGGGCC-GCGG-CGAGCaCGgCau -5'
26423 5' -62 NC_005345.2 + 36481 0.67 0.276945
Target:  5'- aCCGACCCGGCGgguaCGCcaaCGgcgGCCGa- -3'
miRNA:   3'- cGGUUGGGCCGCg---GCGa--GCa--CGGCau -5'
26423 5' -62 NC_005345.2 + 42848 0.67 0.274914
Target:  5'- gGCCGgaACCCGGcCGggaugaaggcggccCCGCaCGUGCUGUGg -3'
miRNA:   3'- -CGGU--UGGGCC-GC--------------GGCGaGCACGGCAU- -5'
26423 5' -62 NC_005345.2 + 43937 0.68 0.270223
Target:  5'- gGCCGGCCgCGaGCuGCCcgGC-CGUGCCGg- -3'
miRNA:   3'- -CGGUUGG-GC-CG-CGG--CGaGCACGGCau -5'
26423 5' -62 NC_005345.2 + 48364 0.68 0.270223
Target:  5'- aGCgGGCCCGGUcggcaucccccGCCGC-CG-GCCGg- -3'
miRNA:   3'- -CGgUUGGGCCG-----------CGGCGaGCaCGGCau -5'
26423 5' -62 NC_005345.2 + 34650 0.68 0.263633
Target:  5'- uGCC-GCUCGGCGUCGCg-GUcGCCGg- -3'
miRNA:   3'- -CGGuUGGGCCGCGGCGagCA-CGGCau -5'
26423 5' -62 NC_005345.2 + 42441 0.68 0.263633
Target:  5'- aCCGugCCcGCcgGCUGCUCGUGCCa-- -3'
miRNA:   3'- cGGUugGGcCG--CGGCGAGCACGGcau -5'
26423 5' -62 NC_005345.2 + 11420 0.68 0.257174
Target:  5'- cGCCGACcagCCGGCGCCGC----GCCGc- -3'
miRNA:   3'- -CGGUUG---GGCCGCGGCGagcaCGGCau -5'
26423 5' -62 NC_005345.2 + 12799 0.68 0.257174
Target:  5'- -aCGACCCGcccgaGCCGCUCGgcccGCCGg- -3'
miRNA:   3'- cgGUUGGGCcg---CGGCGAGCa---CGGCau -5'
26423 5' -62 NC_005345.2 + 33878 0.68 0.257174
Target:  5'- cGUCGACgUGGgggaCGCCGCUCGcgcgGCCGg- -3'
miRNA:   3'- -CGGUUGgGCC----GCGGCGAGCa---CGGCau -5'
26423 5' -62 NC_005345.2 + 15901 0.68 0.257174
Target:  5'- uGCCAugCCGG-GCCGUgugaucgguUCGggggGCCGg- -3'
miRNA:   3'- -CGGUugGGCCgCGGCG---------AGCa---CGGCau -5'
26423 5' -62 NC_005345.2 + 36514 0.68 0.257174
Target:  5'- cGCCcgcuccgaGGCCCGGUGCCcgaGC-CGUGCCc-- -3'
miRNA:   3'- -CGG--------UUGGGCCGCGG---CGaGCACGGcau -5'
26423 5' -62 NC_005345.2 + 14693 0.68 0.247111
Target:  5'- gGCCGGCCgugcccgugguguggCGGCGa-GCUCGUGCUGc- -3'
miRNA:   3'- -CGGUUGG---------------GCCGCggCGAGCACGGCau -5'
26423 5' -62 NC_005345.2 + 5228 0.68 0.244646
Target:  5'- gGCCGGCCUGaucgccgacGCGCUGCgCGccGCCGUGg -3'
miRNA:   3'- -CGGUUGGGC---------CGCGGCGaGCa-CGGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.