miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26423 5' -62 NC_005345.2 + 8117 0.69 0.232629
Target:  5'- aCCGACCCGGcCGCCG-UCGUcgacggcucuugGCCGc- -3'
miRNA:   3'- cGGUUGGGCC-GCGGCgAGCA------------CGGCau -5'
26423 5' -62 NC_005345.2 + 8665 0.67 0.305166
Target:  5'- cGCCGugCUGcugcuCGCCGCggCGgugGCCGUGa -3'
miRNA:   3'- -CGGUugGGCc----GCGGCGa-GCa--CGGCAU- -5'
26423 5' -62 NC_005345.2 + 8703 0.69 0.226809
Target:  5'- gGgCGGCCCGGCugugGCCGaCUCGUccgucGCCGg- -3'
miRNA:   3'- -CgGUUGGGCCG----CGGC-GAGCA-----CGGCau -5'
26423 5' -62 NC_005345.2 + 10252 0.67 0.290787
Target:  5'- gGUCAcCCgGGCGCCGauCUC-UGCCGUc -3'
miRNA:   3'- -CGGUuGGgCCGCGGC--GAGcACGGCAu -5'
26423 5' -62 NC_005345.2 + 10570 0.67 0.305166
Target:  5'- cCCGGCCgCGaGCGCCacguacGC-CGUGCCGg- -3'
miRNA:   3'- cGGUUGG-GC-CGCGG------CGaGCACGGCau -5'
26423 5' -62 NC_005345.2 + 10769 0.67 0.290083
Target:  5'- uGCCu-CCCGGgaguugcUGCCGCUUGcucgGCCGUc -3'
miRNA:   3'- -CGGuuGGGCC-------GCGGCGAGCa---CGGCAu -5'
26423 5' -62 NC_005345.2 + 11420 0.68 0.257174
Target:  5'- cGCCGACcagCCGGCGCCGC----GCCGc- -3'
miRNA:   3'- -CGGUUG---GGCCGCGGCGagcaCGGCau -5'
26423 5' -62 NC_005345.2 + 11672 0.66 0.359736
Target:  5'- gGCCAACUUcggGGCGCUGCUCagcaggGUCGg- -3'
miRNA:   3'- -CGGUUGGG---CCGCGGCGAGca----CGGCau -5'
26423 5' -62 NC_005345.2 + 12123 0.72 0.141661
Target:  5'- gGCUcGCCCGGUGCCGCUgaaaggCGgcaUGCCGa- -3'
miRNA:   3'- -CGGuUGGGCCGCGGCGA------GC---ACGGCau -5'
26423 5' -62 NC_005345.2 + 12206 0.66 0.327745
Target:  5'- uGCCGcugUCCGGcCGCCGCcuccCGaGCCGUGg -3'
miRNA:   3'- -CGGUu--GGGCC-GCGGCGa---GCaCGGCAU- -5'
26423 5' -62 NC_005345.2 + 12283 0.7 0.199535
Target:  5'- cGCCGACCUGGU-CCGCUCGggaucgagUGCCc-- -3'
miRNA:   3'- -CGGUUGGGCCGcGGCGAGC--------ACGGcau -5'
26423 5' -62 NC_005345.2 + 12799 0.68 0.257174
Target:  5'- -aCGACCCGcccgaGCCGCUCGgcccGCCGg- -3'
miRNA:   3'- cgGUUGGGCcg---CGGCGAGCa---CGGCau -5'
26423 5' -62 NC_005345.2 + 13396 0.66 0.320084
Target:  5'- uCCugcCCCGGgaugcCGCCGCUCGUucgGCCGc- -3'
miRNA:   3'- cGGuu-GGGCC-----GCGGCGAGCA---CGGCau -5'
26423 5' -62 NC_005345.2 + 14367 0.75 0.079804
Target:  5'- -gCGACCCGGCGCaGCUCGgcgaccgGCCGg- -3'
miRNA:   3'- cgGUUGGGCCGCGgCGAGCa------CGGCau -5'
26423 5' -62 NC_005345.2 + 14397 0.66 0.327745
Target:  5'- uGCCGAUCCGGCugcacGUCGC-CGacgccUGCCGg- -3'
miRNA:   3'- -CGGUUGGGCCG-----CGGCGaGC-----ACGGCau -5'
26423 5' -62 NC_005345.2 + 14666 0.69 0.204751
Target:  5'- aCCGGCCgggCGGCGUCGC-CGaUGCCGg- -3'
miRNA:   3'- cGGUUGG---GCCGCGGCGaGC-ACGGCau -5'
26423 5' -62 NC_005345.2 + 14693 0.68 0.247111
Target:  5'- gGCCGGCCgugcccgugguguggCGGCGa-GCUCGUGCUGc- -3'
miRNA:   3'- -CGGUUGG---------------GCCGCggCGAGCACGGCau -5'
26423 5' -62 NC_005345.2 + 15294 0.66 0.335542
Target:  5'- cGCCGaacGCCuCGGCGagGUUCGUcGCCGa- -3'
miRNA:   3'- -CGGU---UGG-GCCGCggCGAGCA-CGGCau -5'
26423 5' -62 NC_005345.2 + 15901 0.68 0.257174
Target:  5'- uGCCAugCCGG-GCCGUgugaucgguUCGggggGCCGg- -3'
miRNA:   3'- -CGGUugGGCCgCGGCG---------AGCa---CGGCau -5'
26423 5' -62 NC_005345.2 + 16636 0.67 0.283108
Target:  5'- cGCCGucACuCCGGUGCUGUUCGUcaucacggucgagGCCGc- -3'
miRNA:   3'- -CGGU--UG-GGCCGCGGCGAGCA-------------CGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.