miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26423 5' -62 NC_005345.2 + 793 0.68 0.242811
Target:  5'- uGCCGACCgGGC-CCGCUuacaccugcucgccCGgggGCCGUc -3'
miRNA:   3'- -CGGUUGGgCCGcGGCGA--------------GCa--CGGCAu -5'
26423 5' -62 NC_005345.2 + 1550 0.69 0.226809
Target:  5'- aGCCAACCgGGCaCCGUgaggcggcagUCGccGCCGUGg -3'
miRNA:   3'- -CGGUUGGgCCGcGGCG----------AGCa-CGGCAU- -5'
26423 5' -62 NC_005345.2 + 2041 0.73 0.108061
Target:  5'- aGCgGGCCCGGCGCgGCcCGgcggGCCGc- -3'
miRNA:   3'- -CGgUUGGGCCGCGgCGaGCa---CGGCau -5'
26423 5' -62 NC_005345.2 + 2796 0.66 0.320084
Target:  5'- uGUCGGCgCCGGCGUgCGCUCGaucGCCu-- -3'
miRNA:   3'- -CGGUUG-GGCCGCG-GCGAGCa--CGGcau -5'
26423 5' -62 NC_005345.2 + 2950 0.67 0.297909
Target:  5'- aUCAACCgGGCggaaagGUCGUUCGcGCCGUAc -3'
miRNA:   3'- cGGUUGGgCCG------CGGCGAGCaCGGCAU- -5'
26423 5' -62 NC_005345.2 + 3265 0.72 0.127203
Target:  5'- uGCCGAgguacCCCGuGCGCaGCUgCGUGCCGUc -3'
miRNA:   3'- -CGGUU-----GGGC-CGCGgCGA-GCACGGCAu -5'
26423 5' -62 NC_005345.2 + 3313 0.66 0.327745
Target:  5'- cGUC-GCCCGcGcCGCCGC-CGUGCaCGUc -3'
miRNA:   3'- -CGGuUGGGC-C-GCGGCGaGCACG-GCAu -5'
26423 5' -62 NC_005345.2 + 3623 0.72 0.127203
Target:  5'- -aCGGCCC-GCGCCGCaggUGUGCCGUc -3'
miRNA:   3'- cgGUUGGGcCGCGGCGa--GCACGGCAu -5'
26423 5' -62 NC_005345.2 + 3650 0.69 0.22055
Target:  5'- -gCAGCCCGGCggcagcgGCCGggaUCGUGUCGUu -3'
miRNA:   3'- cgGUUGGGCCG-------CGGCg--AGCACGGCAu -5'
26423 5' -62 NC_005345.2 + 3688 0.71 0.145504
Target:  5'- cCCAcCCCGGcCGCCGuCUCGgccGCCGg- -3'
miRNA:   3'- cGGUuGGGCC-GCGGC-GAGCa--CGGCau -5'
26423 5' -62 NC_005345.2 + 5212 0.7 0.194435
Target:  5'- gGCCGGCCCGGCGCuacaCGCcgUCGgggUGCCc-- -3'
miRNA:   3'- -CGGUUGGGCCGCG----GCG--AGC---ACGGcau -5'
26423 5' -62 NC_005345.2 + 5228 0.68 0.244646
Target:  5'- gGCCGGCCUGaucgccgacGCGCUGCgCGccGCCGUGg -3'
miRNA:   3'- -CGGUUGGGC---------CGCGGCGaGCa-CGGCAU- -5'
26423 5' -62 NC_005345.2 + 5429 0.66 0.320084
Target:  5'- cGCCGAguucUUCGGCGgCGCcCGggucgGCCGUAg -3'
miRNA:   3'- -CGGUU----GGGCCGCgGCGaGCa----CGGCAU- -5'
26423 5' -62 NC_005345.2 + 5570 0.77 0.055018
Target:  5'- cUCGGCaCCGGCGUgaacaaaagcuucgCGCUCGUGCCGUGg -3'
miRNA:   3'- cGGUUG-GGCCGCG--------------GCGAGCACGGCAU- -5'
26423 5' -62 NC_005345.2 + 5679 0.7 0.18945
Target:  5'- aGCCGACCgCGcuGCGCCGCgaacUCGccGCCGUc -3'
miRNA:   3'- -CGGUUGG-GC--CGCGGCG----AGCa-CGGCAu -5'
26423 5' -62 NC_005345.2 + 5760 0.7 0.199535
Target:  5'- -aCAACCgGGCGCaggcgcaggUGCUCGgcgUGCCGUAc -3'
miRNA:   3'- cgGUUGGgCCGCG---------GCGAGC---ACGGCAU- -5'
26423 5' -62 NC_005345.2 + 6174 0.7 0.175163
Target:  5'- aCCAcacGCCCGGC-CCgGUUCGUGCgCGUGc -3'
miRNA:   3'- cGGU---UGGGCCGcGG-CGAGCACG-GCAU- -5'
26423 5' -62 NC_005345.2 + 6178 0.66 0.343473
Target:  5'- uCCGGCCCGGCGCaguucCGCgCGUuCCGc- -3'
miRNA:   3'- cGGUUGGGCCGCG-----GCGaGCAcGGCau -5'
26423 5' -62 NC_005345.2 + 6384 0.66 0.320084
Target:  5'- gGCCGaguuccaaGCCCGGCaaCCGCcggGUGCCGg- -3'
miRNA:   3'- -CGGU--------UGGGCCGc-GGCGag-CACGGCau -5'
26423 5' -62 NC_005345.2 + 7947 0.67 0.305166
Target:  5'- aGUCGAgCCGGCGggcggggaucCCGUcggucgucgugUCGUGCCGUc -3'
miRNA:   3'- -CGGUUgGGCCGC----------GGCG-----------AGCACGGCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.