Results 1 - 20 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26423 | 5' | -62 | NC_005345.2 | + | 42799 | 1.07 | 0.000254 |
Target: 5'- gGCCAACCCGGCGCCGCUCGUGCCGUAc -3' miRNA: 3'- -CGGUUGGGCCGCGGCGAGCACGGCAU- -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 26794 | 0.7 | 0.199535 |
Target: 5'- gGCCGGCgCCgcgucgcaGGCGCUGCUCGccgcaucacugcUGCCGg- -3' miRNA: 3'- -CGGUUG-GG--------CCGCGGCGAGC------------ACGGCau -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 18285 | 0.69 | 0.204751 |
Target: 5'- cCCGgagcACCCGcGCGCUGUUCGUccucGCCGUc -3' miRNA: 3'- cGGU----UGGGC-CGCGGCGAGCA----CGGCAu -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 29747 | 0.66 | 0.359736 |
Target: 5'- aGCCGACCgagcuCGGCGCgacgcUGCUCGgcacgaccGCCGa- -3' miRNA: 3'- -CGGUUGG-----GCCGCG-----GCGAGCa-------CGGCau -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 26300 | 0.74 | 0.101466 |
Target: 5'- aCCGACCCGGCGaccgggaugaCCGUcgucgaucagccguUCGUGCCGUc -3' miRNA: 3'- cGGUUGGGCCGC----------GGCG--------------AGCACGGCAu -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 2041 | 0.73 | 0.108061 |
Target: 5'- aGCgGGCCCGGCGCgGCcCGgcggGCCGc- -3' miRNA: 3'- -CGgUUGGGCCGCGgCGaGCa---CGGCau -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 24084 | 0.73 | 0.11695 |
Target: 5'- gGCCGGCCgUGGCacucggugcguacGCCGCUCGUG-CGUAu -3' miRNA: 3'- -CGGUUGG-GCCG-------------CGGCGAGCACgGCAU- -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 43518 | 0.73 | 0.120497 |
Target: 5'- gGCgAACCCGGCGCuCGCggagCGgaucGCCGa- -3' miRNA: 3'- -CGgUUGGGCCGCG-GCGa---GCa---CGGCau -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 45980 | 0.71 | 0.145116 |
Target: 5'- cGCCGACCCGGCaCCccgacgaGCUCGccgacGCCGUc -3' miRNA: 3'- -CGGUUGGGCCGcGG-------CGAGCa----CGGCAu -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 12283 | 0.7 | 0.199535 |
Target: 5'- cGCCGACCUGGU-CCGCUCGggaucgagUGCCc-- -3' miRNA: 3'- -CGGUUGGGCCGcGGCGAGC--------ACGGcau -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 25360 | 0.71 | 0.161843 |
Target: 5'- cGCCGuCCUGGCGUgGCa-GUGCCGg- -3' miRNA: 3'- -CGGUuGGGCCGCGgCGagCACGGCau -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 12123 | 0.72 | 0.141661 |
Target: 5'- gGCUcGCCCGGUGCCGCUgaaaggCGgcaUGCCGa- -3' miRNA: 3'- -CGGuUGGGCCGCGGCGA------GC---ACGGCau -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 5570 | 0.77 | 0.055018 |
Target: 5'- cUCGGCaCCGGCGUgaacaaaagcuucgCGCUCGUGCCGUGg -3' miRNA: 3'- cGGUUG-GGCCGCG--------------GCGAGCACGGCAU- -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 5679 | 0.7 | 0.18945 |
Target: 5'- aGCCGACCgCGcuGCGCCGCgaacUCGccGCCGUc -3' miRNA: 3'- -CGGUUGG-GC--CGCGGCG----AGCa-CGGCAu -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 14367 | 0.75 | 0.079804 |
Target: 5'- -gCGACCCGGCGCaGCUCGgcgaccgGCCGg- -3' miRNA: 3'- cgGUUGGGCCGCGgCGAGCa------CGGCau -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 21977 | 0.72 | 0.123808 |
Target: 5'- cGCCGauGCCCGGUaCUGCUCGgGCCGc- -3' miRNA: 3'- -CGGU--UGGGCCGcGGCGAGCaCGGCau -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 5760 | 0.7 | 0.199535 |
Target: 5'- -aCAACCgGGCGCaggcgcaggUGCUCGgcgUGCCGUAc -3' miRNA: 3'- cgGUUGGgCCGCG---------GCGAGC---ACGGCAU- -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 14666 | 0.69 | 0.204751 |
Target: 5'- aCCGGCCgggCGGCGUCGC-CGaUGCCGg- -3' miRNA: 3'- cGGUUGG---GCCGCGGCGaGC-ACGGCau -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 18241 | 0.75 | 0.079804 |
Target: 5'- cGCCcugguCCCGGUGCUGCUCGccgGCCGc- -3' miRNA: 3'- -CGGuu---GGGCCGCGGCGAGCa--CGGCau -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 48049 | 0.73 | 0.108061 |
Target: 5'- uGCUcgUCCGGCGCgcacCGCUCGUcGCCGUc -3' miRNA: 3'- -CGGuuGGGCCGCG----GCGAGCA-CGGCAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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