miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26423 5' -62 NC_005345.2 + 42799 1.07 0.000254
Target:  5'- gGCCAACCCGGCGCCGCUCGUGCCGUAc -3'
miRNA:   3'- -CGGUUGGGCCGCGGCGAGCACGGCAU- -5'
26423 5' -62 NC_005345.2 + 5570 0.77 0.055018
Target:  5'- cUCGGCaCCGGCGUgaacaaaagcuucgCGCUCGUGCCGUGg -3'
miRNA:   3'- cGGUUG-GGCCGCG--------------GCGAGCACGGCAU- -5'
26423 5' -62 NC_005345.2 + 38531 0.76 0.068278
Target:  5'- uGCuCGACCCGGgccgaccggccgcgcCGCUGCUCGUGCCa-- -3'
miRNA:   3'- -CG-GUUGGGCC---------------GCGGCGAGCACGGcau -5'
26423 5' -62 NC_005345.2 + 38317 0.76 0.071397
Target:  5'- -gCAGCUCGGCGCCgGCUCGUGUCu-- -3'
miRNA:   3'- cgGUUGGGCCGCGG-CGAGCACGGcau -5'
26423 5' -62 NC_005345.2 + 34473 0.75 0.077618
Target:  5'- gGCCGGCCCGGCaucggcgacGCCGCcCG-GCCGg- -3'
miRNA:   3'- -CGGUUGGGCCG---------CGGCGaGCaCGGCau -5'
26423 5' -62 NC_005345.2 + 14367 0.75 0.079804
Target:  5'- -gCGACCCGGCGCaGCUCGgcgaccgGCCGg- -3'
miRNA:   3'- cgGUUGGGCCGCGgCGAGCa------CGGCau -5'
26423 5' -62 NC_005345.2 + 18241 0.75 0.079804
Target:  5'- cGCCcugguCCCGGUGCUGCUCGccgGCCGc- -3'
miRNA:   3'- -CGGuu---GGGCCGCGGCGAGCa--CGGCau -5'
26423 5' -62 NC_005345.2 + 26300 0.74 0.101466
Target:  5'- aCCGACCCGGCGaccgggaugaCCGUcgucgaucagccguUCGUGCCGUc -3'
miRNA:   3'- cGGUUGGGCCGC----------GGCG--------------AGCACGGCAu -5'
26423 5' -62 NC_005345.2 + 48049 0.73 0.108061
Target:  5'- uGCUcgUCCGGCGCgcacCGCUCGUcGCCGUc -3'
miRNA:   3'- -CGGuuGGGCCGCG----GCGAGCA-CGGCAu -5'
26423 5' -62 NC_005345.2 + 2041 0.73 0.108061
Target:  5'- aGCgGGCCCGGCGCgGCcCGgcggGCCGc- -3'
miRNA:   3'- -CGgUUGGGCCGCGgCGaGCa---CGGCau -5'
26423 5' -62 NC_005345.2 + 43713 0.73 0.110448
Target:  5'- gGCCGACCCgGGCGCCGCcgaagaacUCGgcgagacgcucgGCCGa- -3'
miRNA:   3'- -CGGUUGGG-CCGCGGCG--------AGCa-----------CGGCau -5'
26423 5' -62 NC_005345.2 + 34552 0.73 0.114121
Target:  5'- cGUCGAUCCGGaGCCGCUCcgccuuguguaGUGCCGa- -3'
miRNA:   3'- -CGGUUGGGCCgCGGCGAG-----------CACGGCau -5'
26423 5' -62 NC_005345.2 + 24084 0.73 0.11695
Target:  5'- gGCCGGCCgUGGCacucggugcguacGCCGCUCGUG-CGUAu -3'
miRNA:   3'- -CGGUUGG-GCCG-------------CGGCGAGCACgGCAU- -5'
26423 5' -62 NC_005345.2 + 43518 0.73 0.120497
Target:  5'- gGCgAACCCGGCGCuCGCggagCGgaucGCCGa- -3'
miRNA:   3'- -CGgUUGGGCCGCG-GCGa---GCa---CGGCau -5'
26423 5' -62 NC_005345.2 + 21977 0.72 0.123808
Target:  5'- cGCCGauGCCCGGUaCUGCUCGgGCCGc- -3'
miRNA:   3'- -CGGU--UGGGCCGcGGCGAGCaCGGCau -5'
26423 5' -62 NC_005345.2 + 3623 0.72 0.127203
Target:  5'- -aCGGCCC-GCGCCGCaggUGUGCCGUc -3'
miRNA:   3'- cgGUUGGGcCGCGGCGa--GCACGGCAu -5'
26423 5' -62 NC_005345.2 + 3265 0.72 0.127203
Target:  5'- uGCCGAgguacCCCGuGCGCaGCUgCGUGCCGUc -3'
miRNA:   3'- -CGGUU-----GGGC-CGCGgCGA-GCACGGCAu -5'
26423 5' -62 NC_005345.2 + 27140 0.72 0.130684
Target:  5'- gGCgGGCCCGGCauGCCGC-CGUGCgGc- -3'
miRNA:   3'- -CGgUUGGGCCG--CGGCGaGCACGgCau -5'
26423 5' -62 NC_005345.2 + 26985 0.72 0.137912
Target:  5'- cCCAGCgCCGGCGCUGCUCGccacagcgucGCgGUAg -3'
miRNA:   3'- cGGUUG-GGCCGCGGCGAGCa---------CGgCAU- -5'
26423 5' -62 NC_005345.2 + 27548 0.72 0.141661
Target:  5'- gGCCGGaugaguCCCgGGUGCCGUUCGggggGCCGUc -3'
miRNA:   3'- -CGGUU------GGG-CCGCGGCGAGCa---CGGCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.