Results 1 - 20 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26423 | 5' | -62 | NC_005345.2 | + | 17853 | 0.65 | 0.365554 |
Target: 5'- aGCagcGCCCGGCGggaauccucgggguCCGC-CGUGgCGUAg -3' miRNA: 3'- -CGgu-UGGGCCGC--------------GGCGaGCACgGCAU- -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 30512 | 0.66 | 0.327745 |
Target: 5'- -gCGACCCGcgggcgaggguGCuGCCGCUCugcGUGCCGg- -3' miRNA: 3'- cgGUUGGGC-----------CG-CGGCGAG---CACGGCau -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 39194 | 0.66 | 0.326973 |
Target: 5'- aGCCcgAACCCGG-GCCGCggguuggcgaccgUCGgGCCGa- -3' miRNA: 3'- -CGG--UUGGGCCgCGGCG-------------AGCaCGGCau -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 38828 | 0.66 | 0.320084 |
Target: 5'- uGCaCGACC--GCGaacaCGCUCGUGCCGg- -3' miRNA: 3'- -CG-GUUGGgcCGCg---GCGAGCACGGCau -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 2796 | 0.66 | 0.320084 |
Target: 5'- uGUCGGCgCCGGCGUgCGCUCGaucGCCu-- -3' miRNA: 3'- -CGGUUG-GGCCGCG-GCGAGCa--CGGcau -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 13396 | 0.66 | 0.320084 |
Target: 5'- uCCugcCCCGGgaugcCGCCGCUCGUucgGCCGc- -3' miRNA: 3'- cGGuu-GGGCC-----GCGGCGAGCA---CGGCau -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 5429 | 0.66 | 0.320084 |
Target: 5'- cGCCGAguucUUCGGCGgCGCcCGggucgGCCGUAg -3' miRNA: 3'- -CGGUU----GGGCCGCgGCGaGCa----CGGCAU- -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 6384 | 0.66 | 0.320084 |
Target: 5'- gGCCGaguuccaaGCCCGGCaaCCGCcggGUGCCGg- -3' miRNA: 3'- -CGGU--------UGGGCCGc-GGCGag-CACGGCau -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 30912 | 0.66 | 0.325433 |
Target: 5'- -gCAACCCGGUgacgaccgccggcgGCCGCUCacgGUGCaCGg- -3' miRNA: 3'- cgGUUGGGCCG--------------CGGCGAG---CACG-GCau -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 43056 | 0.66 | 0.327745 |
Target: 5'- cGCgGugCCGGC-UCGgUCGUGUCGUc -3' miRNA: 3'- -CGgUugGGCCGcGGCgAGCACGGCAu -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 20793 | 0.66 | 0.327745 |
Target: 5'- cGCC-GCCCugucGGCGCCGaCggcgCGUGUCGc- -3' miRNA: 3'- -CGGuUGGG----CCGCGGC-Ga---GCACGGCau -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 12206 | 0.66 | 0.327745 |
Target: 5'- uGCCGcugUCCGGcCGCCGCcuccCGaGCCGUGg -3' miRNA: 3'- -CGGUu--GGGCC-GCGGCGa---GCaCGGCAU- -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 11672 | 0.66 | 0.359736 |
Target: 5'- gGCCAACUUcggGGCGCUGCUCagcaggGUCGg- -3' miRNA: 3'- -CGGUUGGG---CCGCGGCGAGca----CGGCau -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 19110 | 0.66 | 0.35891 |
Target: 5'- cGUCGGCCCacgcgugGGCGCCgauccGCUCGgcgaccucgGCCGg- -3' miRNA: 3'- -CGGUUGGG-------CCGCGG-----CGAGCa--------CGGCau -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 37215 | 0.66 | 0.351538 |
Target: 5'- aGCCGuucGCCCucgcGUGUCgGCggCGUGCCGUAg -3' miRNA: 3'- -CGGU---UGGGc---CGCGG-CGa-GCACGGCAU- -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 31311 | 0.66 | 0.351538 |
Target: 5'- cGCCGggGCCCGGCgGCCGggCGggaaggggcacGCCGg- -3' miRNA: 3'- -CGGU--UGGGCCG-CGGCgaGCa----------CGGCau -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 42682 | 0.66 | 0.343473 |
Target: 5'- cGCCGuacaGCUCGGCGgcCCGCUCGaUGUaCGUc -3' miRNA: 3'- -CGGU----UGGGCCGC--GGCGAGC-ACG-GCAu -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 17896 | 0.66 | 0.335542 |
Target: 5'- cGCCGAUCaCGGCGCCGCgcacacgguUCGacuccucggugaUGUCGg- -3' miRNA: 3'- -CGGUUGG-GCCGCGGCG---------AGC------------ACGGCau -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 15294 | 0.66 | 0.335542 |
Target: 5'- cGCCGaacGCCuCGGCGagGUUCGUcGCCGa- -3' miRNA: 3'- -CGGU---UGG-GCCGCggCGAGCA-CGGCau -5' |
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26423 | 5' | -62 | NC_005345.2 | + | 32258 | 0.66 | 0.335542 |
Target: 5'- uGCCucgaCgGGCGCCuuccgccgccacGCUCG-GCCGUAc -3' miRNA: 3'- -CGGuug-GgCCGCGG------------CGAGCaCGGCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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