miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26424 3' -56.1 NC_005345.2 + 24446 0.67 0.60854
Target:  5'- gGUCgCgGAGAacucgGCGGCCGacuaucaGGCGAUCa -3'
miRNA:   3'- aCAGgGaCUCU-----UGCUGGUg------CCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 21791 0.66 0.65219
Target:  5'- gGUCggguggaCUGAuu-CGAUgGCGGCGGCCg -3'
miRNA:   3'- aCAGg------GACUcuuGCUGgUGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 36483 0.67 0.575978
Target:  5'- cGaCCCggcGGGuACG-CCaACGGCGGCCg -3'
miRNA:   3'- aCaGGGa--CUCuUGCuGG-UGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 45201 0.72 0.343497
Target:  5'- cG-CCC-GAGAGgcugcCGGCCGCGGCGAgCa -3'
miRNA:   3'- aCaGGGaCUCUU-----GCUGGUGCCGCUgG- -5'
26424 3' -56.1 NC_005345.2 + 591 0.66 0.64128
Target:  5'- gUGaUCgUGGGAGuCGGCCGCcaccgGGUGACCa -3'
miRNA:   3'- -ACaGGgACUCUU-GCUGGUG-----CCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 29868 0.67 0.630362
Target:  5'- gGUCCggCUGuGGACG-CaCGCGGCcGCCg -3'
miRNA:   3'- aCAGG--GACuCUUGCuG-GUGCCGcUGG- -5'
26424 3' -56.1 NC_005345.2 + 16019 0.66 0.663082
Target:  5'- aGgCCCgcGAGggUGAgacCCGCGGCGAgUa -3'
miRNA:   3'- aCaGGGa-CUCuuGCU---GGUGCCGCUgG- -5'
26424 3' -56.1 NC_005345.2 + 43781 0.66 0.684769
Target:  5'- cUGUUCCggcuccugGAGAucgccgggcagcGCGcCCACGGC-ACCg -3'
miRNA:   3'- -ACAGGGa-------CUCU------------UGCuGGUGCCGcUGG- -5'
26424 3' -56.1 NC_005345.2 + 20519 0.72 0.335368
Target:  5'- cUG-CCCcGGGAuCGGCCuGCGGCGACa -3'
miRNA:   3'- -ACaGGGaCUCUuGCUGG-UGCCGCUGg -5'
26424 3' -56.1 NC_005345.2 + 30915 0.73 0.304266
Target:  5'- --aCCC-GGuGACGACCGcCGGCGGCCg -3'
miRNA:   3'- acaGGGaCUcUUGCUGGU-GCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 19740 0.7 0.404295
Target:  5'- cG-CCCgcGAG-GCGACCgaggccgagGCGGCGGCCg -3'
miRNA:   3'- aCaGGGa-CUCuUGCUGG---------UGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 29789 0.7 0.451672
Target:  5'- aGUCCCUcGAaGACGACUAcgcgcucgccccCGGCGAgCa -3'
miRNA:   3'- aCAGGGA-CUcUUGCUGGU------------GCCGCUgG- -5'
26424 3' -56.1 NC_005345.2 + 8909 0.71 0.386242
Target:  5'- cGUCCCcGcucgccAgGAUCACGGCGGCCg -3'
miRNA:   3'- aCAGGGaCucu---UgCUGGUGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 11283 0.66 0.663082
Target:  5'- cGUCcgggCCUGAGccucgcCGGCCGCGacCGACCg -3'
miRNA:   3'- aCAG----GGACUCuu----GCUGGUGCc-GCUGG- -5'
26424 3' -56.1 NC_005345.2 + 40808 0.69 0.481513
Target:  5'- gUGUCCCaguggcacGGGAACGGgggguguuCGGCGACCa -3'
miRNA:   3'- -ACAGGGa-------CUCUUGCUggu-----GCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 3405 0.69 0.491672
Target:  5'- aGUUCgggCUGAGAgaggcgGCGGgCGCGGCGGCg -3'
miRNA:   3'- aCAGG---GACUCU------UGCUgGUGCCGCUGg -5'
26424 3' -56.1 NC_005345.2 + 36822 0.69 0.491672
Target:  5'- cGUCUUgcaGGGACGACCGauCGGCG-CCg -3'
miRNA:   3'- aCAGGGac-UCUUGCUGGU--GCCGCuGG- -5'
26424 3' -56.1 NC_005345.2 + 29270 0.68 0.511239
Target:  5'- gGUUCCUGucucgugucugcgGGAugGGugauCCGgGGCGGCCg -3'
miRNA:   3'- aCAGGGAC-------------UCUugCU----GGUgCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 19746 0.67 0.623811
Target:  5'- cGUCgCUGucgcgugcaccgaccAGAGC-ACCGCGGCcacGACCg -3'
miRNA:   3'- aCAGgGAC---------------UCUUGcUGGUGCCG---CUGG- -5'
26424 3' -56.1 NC_005345.2 + 16344 0.67 0.619446
Target:  5'- aGUgCCUcgcGGAACGcgccgagcaucGCCGCGGCGucGCCg -3'
miRNA:   3'- aCAgGGAc--UCUUGC-----------UGGUGCCGC--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.