Results 1 - 20 of 71 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26424 | 3' | -56.1 | NC_005345.2 | + | 43211 | 1.11 | 0.000632 |
Target: 5'- cUGUCCCUGAGAACGACCACGGCGACCc -3' miRNA: 3'- -ACAGGGACUCUUGCUGGUGCCGCUGG- -5' |
|||||||
26424 | 3' | -56.1 | NC_005345.2 | + | 43119 | 0.68 | 0.543824 |
Target: 5'- cGUCCCgGAccGGugGcCCaACGGcCGGCCg -3' miRNA: 3'- aCAGGGaCU--CUugCuGG-UGCC-GCUGG- -5' |
|||||||
26424 | 3' | -56.1 | NC_005345.2 | + | 36483 | 0.67 | 0.575978 |
Target: 5'- cGaCCCggcGGGuACG-CCaACGGCGGCCg -3' miRNA: 3'- aCaGGGa--CUCuUGCuGG-UGCCGCUGG- -5' |
|||||||
26424 | 3' | -56.1 | NC_005345.2 | + | 32762 | 0.66 | 0.684769 |
Target: 5'- aUGcCCCUcaugguggcggcGcAGAGCGgcgacGCCGCGGCGAUg -3' miRNA: 3'- -ACaGGGA------------C-UCUUGC-----UGGUGCCGCUGg -5' |
|||||||
26424 | 3' | -56.1 | NC_005345.2 | + | 20519 | 0.72 | 0.335368 |
Target: 5'- cUG-CCCcGGGAuCGGCCuGCGGCGACa -3' miRNA: 3'- -ACaGGGaCUCUuGCUGG-UGCCGCUGg -5' |
|||||||
26424 | 3' | -56.1 | NC_005345.2 | + | 45201 | 0.72 | 0.343497 |
Target: 5'- cG-CCC-GAGAGgcugcCGGCCGCGGCGAgCa -3' miRNA: 3'- aCaGGGaCUCUU-----GCUGGUGCCGCUgG- -5' |
|||||||
26424 | 3' | -56.1 | NC_005345.2 | + | 19740 | 0.7 | 0.404295 |
Target: 5'- cG-CCCgcGAG-GCGACCgaggccgagGCGGCGGCCg -3' miRNA: 3'- aCaGGGa-CUCuUGCUGG---------UGCCGCUGG- -5' |
|||||||
26424 | 3' | -56.1 | NC_005345.2 | + | 40243 | 0.7 | 0.441951 |
Target: 5'- aGUUCCggaucGAG-ACGAUCgACGGCGACg -3' miRNA: 3'- aCAGGGa----CUCuUGCUGG-UGCCGCUGg -5' |
|||||||
26424 | 3' | -56.1 | NC_005345.2 | + | 32214 | 0.69 | 0.461508 |
Target: 5'- cGUCaaCCcGGGcuCGuCCGCGGUGACCg -3' miRNA: 3'- aCAG--GGaCUCuuGCuGGUGCCGCUGG- -5' |
|||||||
26424 | 3' | -56.1 | NC_005345.2 | + | 30697 | 0.68 | 0.522715 |
Target: 5'- cGgCCggCUGcGggUGGCCGCGGUGAUCg -3' miRNA: 3'- aCaGG--GACuCuuGCUGGUGCCGCUGG- -5' |
|||||||
26424 | 3' | -56.1 | NC_005345.2 | + | 7235 | 0.69 | 0.491672 |
Target: 5'- gUGUCgUcGGcGACGACCAgGGCGACg -3' miRNA: 3'- -ACAGgGaCUcUUGCUGGUgCCGCUGg -5' |
|||||||
26424 | 3' | -56.1 | NC_005345.2 | + | 29789 | 0.7 | 0.451672 |
Target: 5'- aGUCCCUcGAaGACGACUAcgcgcucgccccCGGCGAgCa -3' miRNA: 3'- aCAGGGA-CUcUUGCUGGU------------GCCGCUgG- -5' |
|||||||
26424 | 3' | -56.1 | NC_005345.2 | + | 38487 | 0.77 | 0.173936 |
Target: 5'- --aCCCUGAucggcucgccgacccGGGCGACCAUGGCGAgCCc -3' miRNA: 3'- acaGGGACU---------------CUUGCUGGUGCCGCU-GG- -5' |
|||||||
26424 | 3' | -56.1 | NC_005345.2 | + | 44327 | 0.69 | 0.491672 |
Target: 5'- --aUCCUGuGGGCcGCCACGGUGcCCg -3' miRNA: 3'- acaGGGACuCUUGcUGGUGCCGCuGG- -5' |
|||||||
26424 | 3' | -56.1 | NC_005345.2 | + | 9274 | 0.75 | 0.201991 |
Target: 5'- aGUCCCgcauguCGGCCGCGGCGuACCu -3' miRNA: 3'- aCAGGGacucuuGCUGGUGCCGC-UGG- -5' |
|||||||
26424 | 3' | -56.1 | NC_005345.2 | + | 1634 | 0.7 | 0.441951 |
Target: 5'- -aUCCCggggGAGggUGGCaggCAgGGUGACCg -3' miRNA: 3'- acAGGGa---CUCuuGCUG---GUgCCGCUGG- -5' |
|||||||
26424 | 3' | -56.1 | NC_005345.2 | + | 22037 | 0.68 | 0.522715 |
Target: 5'- gGUCCCggccGAGcucacgagcCGACCGCGGUGGguCCg -3' miRNA: 3'- aCAGGGa---CUCuu-------GCUGGUGCCGCU--GG- -5' |
|||||||
26424 | 3' | -56.1 | NC_005345.2 | + | 9224 | 0.68 | 0.561982 |
Target: 5'- aGUCCCggcGAcgcucaagucguacGccuGCGACCACGguGCGGCCg -3' miRNA: 3'- aCAGGGa--CU--------------Cu--UGCUGGUGC--CGCUGG- -5' |
|||||||
26424 | 3' | -56.1 | NC_005345.2 | + | 30915 | 0.73 | 0.304266 |
Target: 5'- --aCCC-GGuGACGACCGcCGGCGGCCg -3' miRNA: 3'- acaGGGaCUcUUGCUGGU-GCCGCUGG- -5' |
|||||||
26424 | 3' | -56.1 | NC_005345.2 | + | 8909 | 0.71 | 0.386242 |
Target: 5'- cGUCCCcGcucgccAgGAUCACGGCGGCCg -3' miRNA: 3'- aCAGGGaCucu---UgCUGGUGCCGCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home