miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26424 3' -56.1 NC_005345.2 + 43211 1.11 0.000632
Target:  5'- cUGUCCCUGAGAACGACCACGGCGACCc -3'
miRNA:   3'- -ACAGGGACUCUUGCUGGUGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 38487 0.77 0.173936
Target:  5'- --aCCCUGAucggcucgccgacccGGGCGACCAUGGCGAgCCc -3'
miRNA:   3'- acaGGGACU---------------CUUGCUGGUGCCGCU-GG- -5'
26424 3' -56.1 NC_005345.2 + 9274 0.75 0.201991
Target:  5'- aGUCCCgcauguCGGCCGCGGCGuACCu -3'
miRNA:   3'- aCAGGGacucuuGCUGGUGCCGC-UGG- -5'
26424 3' -56.1 NC_005345.2 + 5139 0.74 0.23633
Target:  5'- --aCCCggcgaucagGAgGAACGcGCCGCGGCGGCCg -3'
miRNA:   3'- acaGGGa--------CU-CUUGC-UGGUGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 41514 0.74 0.248819
Target:  5'- cGUCCCgaacgcgGAGcGCGAgCGucuCGGCGACCu -3'
miRNA:   3'- aCAGGGa------CUCuUGCUgGU---GCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 38511 0.74 0.255918
Target:  5'- gGUCCCUGAGucacgcgugcugcuCGACC-CGGgcCGACCg -3'
miRNA:   3'- aCAGGGACUCuu------------GCUGGuGCC--GCUGG- -5'
26424 3' -56.1 NC_005345.2 + 30165 0.73 0.289566
Target:  5'- cGUCCCgc----CGGCCAgCGGCGACCc -3'
miRNA:   3'- aCAGGGacucuuGCUGGU-GCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 30915 0.73 0.304266
Target:  5'- --aCCC-GGuGACGACCGcCGGCGGCCg -3'
miRNA:   3'- acaGGGaCUcUUGCUGGU-GCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 3078 0.72 0.311829
Target:  5'- gUGUCggcgaggacaCUGGGAAUGAUgGCGGCGAUCc -3'
miRNA:   3'- -ACAGg---------GACUCUUGCUGgUGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 20519 0.72 0.335368
Target:  5'- cUG-CCCcGGGAuCGGCCuGCGGCGACa -3'
miRNA:   3'- -ACaGGGaCUCUuGCUGG-UGCCGCUGg -5'
26424 3' -56.1 NC_005345.2 + 45201 0.72 0.343497
Target:  5'- cG-CCC-GAGAGgcugcCGGCCGCGGCGAgCa -3'
miRNA:   3'- aCaGGGaCUCUU-----GCUGGUGCCGCUgG- -5'
26424 3' -56.1 NC_005345.2 + 4032 0.72 0.351768
Target:  5'- cGcCCCUGu--GCGACgACGGCG-CCg -3'
miRNA:   3'- aCaGGGACucuUGCUGgUGCCGCuGG- -5'
26424 3' -56.1 NC_005345.2 + 8909 0.71 0.386242
Target:  5'- cGUCCCcGcucgccAgGAUCACGGCGGCCg -3'
miRNA:   3'- aCAGGGaCucu---UgCUGGUGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 19740 0.7 0.404295
Target:  5'- cG-CCCgcGAG-GCGACCgaggccgagGCGGCGGCCg -3'
miRNA:   3'- aCaGGGa-CUCuUGCUGG---------UGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 37337 0.7 0.422871
Target:  5'- gGUCCggUUGucGAACG-CCGCGGCGugCc -3'
miRNA:   3'- aCAGG--GACu-CUUGCuGGUGCCGCugG- -5'
26424 3' -56.1 NC_005345.2 + 40243 0.7 0.441951
Target:  5'- aGUUCCggaucGAG-ACGAUCgACGGCGACg -3'
miRNA:   3'- aCAGGGa----CUCuUGCUGG-UGCCGCUGg -5'
26424 3' -56.1 NC_005345.2 + 1634 0.7 0.441951
Target:  5'- -aUCCCggggGAGggUGGCaggCAgGGUGACCg -3'
miRNA:   3'- acAGGGa---CUCuuGCUG---GUgCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 29789 0.7 0.451672
Target:  5'- aGUCCCUcGAaGACGACUAcgcgcucgccccCGGCGAgCa -3'
miRNA:   3'- aCAGGGA-CUcUUGCUGGU------------GCCGCUgG- -5'
26424 3' -56.1 NC_005345.2 + 32214 0.69 0.461508
Target:  5'- cGUCaaCCcGGGcuCGuCCGCGGUGACCg -3'
miRNA:   3'- aCAG--GGaCUCuuGCuGGUGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 44857 0.69 0.471457
Target:  5'- -aUCUCcGAG-GCGccCCGCGGCGGCCg -3'
miRNA:   3'- acAGGGaCUCuUGCu-GGUGCCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.