miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26424 3' -56.1 NC_005345.2 + 591 0.66 0.64128
Target:  5'- gUGaUCgUGGGAGuCGGCCGCcaccgGGUGACCa -3'
miRNA:   3'- -ACaGGgACUCUU-GCUGGUG-----CCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 1161 0.67 0.575978
Target:  5'- cG-CCgCgagGGGAGCGugCGCGGCGcACa -3'
miRNA:   3'- aCaGG-Ga--CUCUUGCugGUGCCGC-UGg -5'
26424 3' -56.1 NC_005345.2 + 1634 0.7 0.441951
Target:  5'- -aUCCCggggGAGggUGGCaggCAgGGUGACCg -3'
miRNA:   3'- acAGGGa---CUCuuGCUG---GUgCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 2750 0.66 0.64128
Target:  5'- cGgCCCgcauguGGAGCGcGCCacgcGCGGCGGCCu -3'
miRNA:   3'- aCaGGGac----UCUUGC-UGG----UGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 3078 0.72 0.311829
Target:  5'- gUGUCggcgaggacaCUGGGAAUGAUgGCGGCGAUCc -3'
miRNA:   3'- -ACAGg---------GACUCUUGCUGgUGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 3193 0.67 0.630362
Target:  5'- aG-CCCUGAGGGauguCGuACC-CGGCGAUg -3'
miRNA:   3'- aCaGGGACUCUU----GC-UGGuGCCGCUGg -5'
26424 3' -56.1 NC_005345.2 + 3405 0.69 0.491672
Target:  5'- aGUUCgggCUGAGAgaggcgGCGGgCGCGGCGGCg -3'
miRNA:   3'- aCAGG---GACUCU------UGCUgGUGCCGCUGg -5'
26424 3' -56.1 NC_005345.2 + 4032 0.72 0.351768
Target:  5'- cGcCCCUGu--GCGACgACGGCG-CCg -3'
miRNA:   3'- aCaGGGACucuUGCUGgUGCCGCuGG- -5'
26424 3' -56.1 NC_005345.2 + 5139 0.74 0.23633
Target:  5'- --aCCCggcgaucagGAgGAACGcGCCGCGGCGGCCg -3'
miRNA:   3'- acaGGGa--------CU-CUUGC-UGGUGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 5408 0.66 0.684769
Target:  5'- gGUCgCaacGAGcgUGACgGCGGCGACg -3'
miRNA:   3'- aCAGgGa--CUCuuGCUGgUGCCGCUGg -5'
26424 3' -56.1 NC_005345.2 + 7235 0.69 0.491672
Target:  5'- gUGUCgUcGGcGACGACCAgGGCGACg -3'
miRNA:   3'- -ACAGgGaCUcUUGCUGGUgCCGCUGg -5'
26424 3' -56.1 NC_005345.2 + 8909 0.71 0.386242
Target:  5'- cGUCCCcGcucgccAgGAUCACGGCGGCCg -3'
miRNA:   3'- aCAGGGaCucu---UgCUGGUGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 9224 0.68 0.561982
Target:  5'- aGUCCCggcGAcgcucaagucguacGccuGCGACCACGguGCGGCCg -3'
miRNA:   3'- aCAGGGa--CU--------------Cu--UGCUGGUGC--CGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 9274 0.75 0.201991
Target:  5'- aGUCCCgcauguCGGCCGCGGCGuACCu -3'
miRNA:   3'- aCAGGGacucuuGCUGGUGCCGC-UGG- -5'
26424 3' -56.1 NC_005345.2 + 9308 0.69 0.471457
Target:  5'- cGgCgUUGAGuucgucGGCGACCcggGCGGCGACCa -3'
miRNA:   3'- aCaGgGACUC------UUGCUGG---UGCCGCUGG- -5'
26424 3' -56.1 NC_005345.2 + 11283 0.66 0.663082
Target:  5'- cGUCcgggCCUGAGccucgcCGGCCGCGacCGACCg -3'
miRNA:   3'- aCAG----GGACUCuu----GCUGGUGCc-GCUGG- -5'
26424 3' -56.1 NC_005345.2 + 13241 0.67 0.575978
Target:  5'- cGUCCCcGAGccacccGACGaugccGCCGuCGGCGAaCCg -3'
miRNA:   3'- aCAGGGaCUC------UUGC-----UGGU-GCCGCU-GG- -5'
26424 3' -56.1 NC_005345.2 + 15031 0.66 0.663082
Target:  5'- -uUCCUUGAucGCGuCgGCGGCGAUg -3'
miRNA:   3'- acAGGGACUcuUGCuGgUGCCGCUGg -5'
26424 3' -56.1 NC_005345.2 + 16019 0.66 0.663082
Target:  5'- aGgCCCgcGAGggUGAgacCCGCGGCGAgUa -3'
miRNA:   3'- aCaGGGa-CUCuuGCU---GGUGCCGCUgG- -5'
26424 3' -56.1 NC_005345.2 + 16344 0.67 0.619446
Target:  5'- aGUgCCUcgcGGAACGcgccgagcaucGCCGCGGCGucGCCg -3'
miRNA:   3'- aCAgGGAc--UCUUGC-----------UGGUGCCGC--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.