miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26424 5' -56.7 NC_005345.2 + 29983 0.69 0.40576
Target:  5'- gGGCUCGUcggCGUCcUCGGCCGGGGu -3'
miRNA:   3'- aCCGGGCGuaaGUAGuGGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 7402 0.7 0.387475
Target:  5'- aGGCCCGCAUg-GUCGCguuCGACCucGAa -3'
miRNA:   3'- aCCGGGCGUAagUAGUG---GCUGGucCU- -5'
26424 5' -56.7 NC_005345.2 + 3820 0.7 0.378539
Target:  5'- aGGCCgCGCAgcagC-UCGCCGGCUcGGAu -3'
miRNA:   3'- aCCGG-GCGUaa--GuAGUGGCUGGuCCU- -5'
26424 5' -56.7 NC_005345.2 + 23632 0.7 0.373243
Target:  5'- cGGCUgCGCAUgguguucgccgaggCGgacggCGCCGACCAGGGu -3'
miRNA:   3'- aCCGG-GCGUAa-------------GUa----GUGGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 31497 0.7 0.369741
Target:  5'- cGGcCCCGCGaacacggUCGUgACCGACCGGc- -3'
miRNA:   3'- aCC-GGGCGUa------AGUAgUGGCUGGUCcu -5'
26424 5' -56.7 NC_005345.2 + 12260 0.7 0.361085
Target:  5'- aGGCCCGgcuCGUUCGgaccguaCGCCGACCuGGu -3'
miRNA:   3'- aCCGGGC---GUAAGUa------GUGGCUGGuCCu -5'
26424 5' -56.7 NC_005345.2 + 11185 0.7 0.361085
Target:  5'- aGGUCCGCAgccuggUCGaCGCCGGCCuguGGc -3'
miRNA:   3'- aCCGGGCGUa-----AGUaGUGGCUGGu--CCu -5'
26424 5' -56.7 NC_005345.2 + 30299 0.7 0.361085
Target:  5'- cGGCCCGCAccugC-UCGCCugccccguuGACCAGGc -3'
miRNA:   3'- aCCGGGCGUaa--GuAGUGG---------CUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 43501 0.7 0.35257
Target:  5'- gGGCCCGCcgggCggUGCCGAUCGGGu -3'
miRNA:   3'- aCCGGGCGuaa-GuaGUGGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 48057 0.7 0.35257
Target:  5'- cGGCgCGCAccgcUCGUCGCCGuCgAGGGg -3'
miRNA:   3'- aCCGgGCGUa---AGUAGUGGCuGgUCCU- -5'
26424 5' -56.7 NC_005345.2 + 46781 0.7 0.344199
Target:  5'- gGGCCCGCGag-GUCG-CGACCGGGc -3'
miRNA:   3'- aCCGGGCGUaagUAGUgGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 30426 0.7 0.344199
Target:  5'- aUGGCgCGCca-CAUC-CCGACCGGGc -3'
miRNA:   3'- -ACCGgGCGuaaGUAGuGGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 6023 0.71 0.335972
Target:  5'- cGGCCgGCcgUUGggcCACCGGuCCGGGAc -3'
miRNA:   3'- aCCGGgCGuaAGUa--GUGGCU-GGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 28164 0.71 0.327889
Target:  5'- cGGUCgGCGUUCcUCGCCGcgGCCAaGGGg -3'
miRNA:   3'- aCCGGgCGUAAGuAGUGGC--UGGU-CCU- -5'
26424 5' -56.7 NC_005345.2 + 30903 0.71 0.30451
Target:  5'- cGGCCgGCGagCAgCACCGggACCAGGGc -3'
miRNA:   3'- aCCGGgCGUaaGUaGUGGC--UGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 43913 0.71 0.30451
Target:  5'- cGGCgCGCAgcgCGUCGgCGAUCAGGc -3'
miRNA:   3'- aCCGgGCGUaa-GUAGUgGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 26260 0.71 0.30451
Target:  5'- cGGCaCGCucUCGUCGaCGACCAGGAc -3'
miRNA:   3'- aCCGgGCGuaAGUAGUgGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 17508 0.71 0.297006
Target:  5'- cGGgCCGCcg--GUCGCCGGCCGGGc -3'
miRNA:   3'- aCCgGGCGuaagUAGUGGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 7353 0.72 0.289647
Target:  5'- gUGGCCCGCGguggCGcaGCCGGgCGGGGg -3'
miRNA:   3'- -ACCGGGCGUaa--GUagUGGCUgGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 9304 0.72 0.282432
Target:  5'- cGGCCgGCGUugaguUCGUCGgCGACCcGGGc -3'
miRNA:   3'- aCCGGgCGUA-----AGUAGUgGCUGGuCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.