miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26424 5' -56.7 NC_005345.2 + 48367 0.72 0.27466
Target:  5'- gGGCCCGgucggCAUCccccgccGCCGGCCGGGGc -3'
miRNA:   3'- aCCGGGCguaa-GUAG-------UGGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 6278 0.66 0.568751
Target:  5'- gGGCgCCGgg--CGUCACCGACCgaaAGGc -3'
miRNA:   3'- aCCG-GGCguaaGUAGUGGCUGG---UCCu -5'
26424 5' -56.7 NC_005345.2 + 31610 0.68 0.440977
Target:  5'- cGGCCCGCGgaucgCAuggcgacacgguccUCGCCcGGCCGGcGAc -3'
miRNA:   3'- aCCGGGCGUaa---GU--------------AGUGG-CUGGUC-CU- -5'
26424 5' -56.7 NC_005345.2 + 46417 0.73 0.248485
Target:  5'- cGGgCCGCugUCAUCGCCGGgCGGGc -3'
miRNA:   3'- aCCgGGCGuaAGUAGUGGCUgGUCCu -5'
26424 5' -56.7 NC_005345.2 + 15394 0.68 0.494282
Target:  5'- uUGGCCCGgGUgcugccugCGacgggCACCGGCuCGGGGa -3'
miRNA:   3'- -ACCGGGCgUAa-------GUa----GUGGCUG-GUCCU- -5'
26424 5' -56.7 NC_005345.2 + 5624 0.66 0.579656
Target:  5'- gUGGCCgaCGCggUgAUCGCCGACCc-GAu -3'
miRNA:   3'- -ACCGG--GCGuaAgUAGUGGCUGGucCU- -5'
26424 5' -56.7 NC_005345.2 + 31659 0.67 0.525728
Target:  5'- cGGCCCGCAguuccUUCccgaCGCCGAgaCAGGc -3'
miRNA:   3'- aCCGGGCGU-----AAGua--GUGGCUg-GUCCu -5'
26424 5' -56.7 NC_005345.2 + 14640 0.75 0.185661
Target:  5'- cGGCCCGCcUcgaccgcguccUCggCACCGGCCGGGc -3'
miRNA:   3'- aCCGGGCGuA-----------AGuaGUGGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 12818 0.79 0.092465
Target:  5'- cGGCCCGCcgGUUCGccugcgccgcaUCACCGGCgAGGAc -3'
miRNA:   3'- aCCGGGCG--UAAGU-----------AGUGGCUGgUCCU- -5'
26424 5' -56.7 NC_005345.2 + 9304 0.72 0.282432
Target:  5'- cGGCCgGCGUugaguUCGUCGgCGACCcGGGc -3'
miRNA:   3'- aCCGGgCGUA-----AGUAGUgGCUGGuCCU- -5'
26424 5' -56.7 NC_005345.2 + 11185 0.7 0.361085
Target:  5'- aGGUCCGCAgccuggUCGaCGCCGGCCuguGGc -3'
miRNA:   3'- aCCGGGCGUa-----AGUaGUGGCUGGu--CCu -5'
26424 5' -56.7 NC_005345.2 + 47104 0.66 0.579656
Target:  5'- cGGCCCGCcgggCcgCGCCgGGCCcgcucgacgAGGAc -3'
miRNA:   3'- aCCGGGCGuaa-GuaGUGG-CUGG---------UCCU- -5'
26424 5' -56.7 NC_005345.2 + 6023 0.71 0.335972
Target:  5'- cGGCCgGCcgUUGggcCACCGGuCCGGGAc -3'
miRNA:   3'- aCCGGgCGuaAGUa--GUGGCU-GGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 43501 0.7 0.35257
Target:  5'- gGGCCCGCcgggCggUGCCGAUCGGGu -3'
miRNA:   3'- aCCGGGCGuaa-GuaGUGGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 30299 0.7 0.361085
Target:  5'- cGGCCCGCAccugC-UCGCCugccccguuGACCAGGc -3'
miRNA:   3'- aCCGGGCGUaa--GuAGUGG---------CUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 3820 0.7 0.378539
Target:  5'- aGGCCgCGCAgcagC-UCGCCGGCUcGGAu -3'
miRNA:   3'- aCCGG-GCGUaa--GuAGUGGCUGGuCCU- -5'
26424 5' -56.7 NC_005345.2 + 29983 0.69 0.40576
Target:  5'- gGGCUCGUcggCGUCcUCGGCCGGGGu -3'
miRNA:   3'- aCCGGGCGuaaGUAGuGGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 25201 0.67 0.557899
Target:  5'- -aGCCCGCGgugaaUCAccCGCCGGCCGGu- -3'
miRNA:   3'- acCGGGCGUa----AGUa-GUGGCUGGUCcu -5'
26424 5' -56.7 NC_005345.2 + 45314 0.67 0.557899
Target:  5'- gGGUCCGCA--CGcCGCCGACCucgcagcGGAc -3'
miRNA:   3'- aCCGGGCGUaaGUaGUGGCUGGu------CCU- -5'
26424 5' -56.7 NC_005345.2 + 19743 0.67 0.547105
Target:  5'- cGGCgUCGCugucgCGUgCACCGACCAGa- -3'
miRNA:   3'- aCCG-GGCGuaa--GUA-GUGGCUGGUCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.