miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26424 5' -56.7 NC_005345.2 + 43245 1.09 0.000592
Target:  5'- gUGGCCCGCAUUCAUCACCGACCAGGAg -3'
miRNA:   3'- -ACCGGGCGUAAGUAGUGGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 47024 0.69 0.423625
Target:  5'- aGGCCUGCuUUCAcugcggcgccgucUCGacgacgcugaccCCGGCCGGGAc -3'
miRNA:   3'- aCCGGGCGuAAGU-------------AGU------------GGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 30190 0.68 0.443908
Target:  5'- gUGGCgCuCGUUCcUCGCCGACCAcGAg -3'
miRNA:   3'- -ACCGgGcGUAAGuAGUGGCUGGUcCU- -5'
26424 5' -56.7 NC_005345.2 + 16366 0.66 0.612597
Target:  5'- cGGCgCCGCggUgAUCGCgaCGAUCGGGu -3'
miRNA:   3'- aCCG-GGCGuaAgUAGUG--GCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 48367 0.72 0.27466
Target:  5'- gGGCCCGgucggCAUCccccgccGCCGGCCGGGGc -3'
miRNA:   3'- aCCGGGCguaa-GUAG-------UGGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 9304 0.72 0.282432
Target:  5'- cGGCCgGCGUugaguUCGUCGgCGACCcGGGc -3'
miRNA:   3'- aCCGGgCGUA-----AGUAGUgGCUGGuCCU- -5'
26424 5' -56.7 NC_005345.2 + 28164 0.71 0.327889
Target:  5'- cGGUCgGCGUUCcUCGCCGcgGCCAaGGGg -3'
miRNA:   3'- aCCGGgCGUAAGuAGUGGC--UGGU-CCU- -5'
26424 5' -56.7 NC_005345.2 + 30426 0.7 0.344199
Target:  5'- aUGGCgCGCca-CAUC-CCGACCGGGc -3'
miRNA:   3'- -ACCGgGCGuaaGUAGuGGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 11185 0.7 0.361085
Target:  5'- aGGUCCGCAgccuggUCGaCGCCGGCCuguGGc -3'
miRNA:   3'- aCCGGGCGUa-----AGUaGUGGCUGGu--CCu -5'
26424 5' -56.7 NC_005345.2 + 26899 0.69 0.415104
Target:  5'- aGGCgCUGCAggCGgcgcUCGCCGACCGGu- -3'
miRNA:   3'- aCCG-GGCGUaaGU----AGUGGCUGGUCcu -5'
26424 5' -56.7 NC_005345.2 + 31497 0.7 0.369741
Target:  5'- cGGcCCCGCGaacacggUCGUgACCGACCGGc- -3'
miRNA:   3'- aCC-GGGCGUa------AGUAgUGGCUGGUCcu -5'
26424 5' -56.7 NC_005345.2 + 48057 0.7 0.35257
Target:  5'- cGGCgCGCAccgcUCGUCGCCGuCgAGGGg -3'
miRNA:   3'- aCCGgGCGUa---AGUAGUGGCuGgUCCU- -5'
26424 5' -56.7 NC_005345.2 + 12818 0.79 0.092465
Target:  5'- cGGCCCGCcgGUUCGccugcgccgcaUCACCGGCgAGGAc -3'
miRNA:   3'- aCCGGGCG--UAAGU-----------AGUGGCUGgUCCU- -5'
26424 5' -56.7 NC_005345.2 + 23632 0.7 0.373243
Target:  5'- cGGCUgCGCAUgguguucgccgaggCGgacggCGCCGACCAGGGu -3'
miRNA:   3'- aCCGG-GCGUAa-------------GUa----GUGGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 14640 0.75 0.185661
Target:  5'- cGGCCCGCcUcgaccgcguccUCggCACCGGCCGGGc -3'
miRNA:   3'- aCCGGGCGuA-----------AGuaGUGGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 46781 0.7 0.344199
Target:  5'- gGGCCCGCGag-GUCG-CGACCGGGc -3'
miRNA:   3'- aCCGGGCGUaagUAGUgGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 7402 0.7 0.387475
Target:  5'- aGGCCCGCAUg-GUCGCguuCGACCucGAa -3'
miRNA:   3'- aCCGGGCGUAagUAGUG---GCUGGucCU- -5'
26424 5' -56.7 NC_005345.2 + 31610 0.68 0.440977
Target:  5'- cGGCCCGCGgaucgCAuggcgacacgguccUCGCCcGGCCGGcGAc -3'
miRNA:   3'- aCCGGGCGUaa---GU--------------AGUGG-CUGGUC-CU- -5'
26424 5' -56.7 NC_005345.2 + 46417 0.73 0.248485
Target:  5'- cGGgCCGCugUCAUCGCCGGgCGGGc -3'
miRNA:   3'- aCCgGGCGuaAGUAGUGGCUgGUCCu -5'
26424 5' -56.7 NC_005345.2 + 7353 0.72 0.289647
Target:  5'- gUGGCCCGCGguggCGcaGCCGGgCGGGGg -3'
miRNA:   3'- -ACCGGGCGUaa--GUagUGGCUgGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.