miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26424 5' -56.7 NC_005345.2 + 776 0.66 0.58403
Target:  5'- cGGCCgGCGgcgggggauGCCGACCGGGc -3'
miRNA:   3'- aCCGGgCGUaaguag---UGGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 3645 0.66 0.612597
Target:  5'- -cGUCCGCAgcccggCggCAgCGGCCGGGAu -3'
miRNA:   3'- acCGGGCGUaa----GuaGUgGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 3820 0.7 0.378539
Target:  5'- aGGCCgCGCAgcagC-UCGCCGGCUcGGAu -3'
miRNA:   3'- aCCGG-GCGUaa--GuAGUGGCUGGuCCU- -5'
26424 5' -56.7 NC_005345.2 + 5624 0.66 0.579656
Target:  5'- gUGGCCgaCGCggUgAUCGCCGACCc-GAu -3'
miRNA:   3'- -ACCGG--GCGuaAgUAGUGGCUGGucCU- -5'
26424 5' -56.7 NC_005345.2 + 6023 0.71 0.335972
Target:  5'- cGGCCgGCcgUUGggcCACCGGuCCGGGAc -3'
miRNA:   3'- aCCGGgCGuaAGUa--GUGGCU-GGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 6278 0.66 0.568751
Target:  5'- gGGCgCCGgg--CGUCACCGACCgaaAGGc -3'
miRNA:   3'- aCCG-GGCguaaGUAGUGGCUGG---UCCu -5'
26424 5' -56.7 NC_005345.2 + 6294 0.76 0.141144
Target:  5'- gGGgCCGCcUUCAUC-CCGGCCGGGu -3'
miRNA:   3'- aCCgGGCGuAAGUAGuGGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 6419 0.72 0.27466
Target:  5'- gGGCCCGCcgUCggucggcgagugGUCGCCGauauccaGCCGGGu -3'
miRNA:   3'- aCCGGGCGuaAG------------UAGUGGC-------UGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 7109 0.66 0.599388
Target:  5'- cGGCCCGCGacguguggCGCCGcgcgaACCGGGc -3'
miRNA:   3'- aCCGGGCGUaagua---GUGGC-----UGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 7353 0.72 0.289647
Target:  5'- gUGGCCCGCGguggCGcaGCCGGgCGGGGg -3'
miRNA:   3'- -ACCGGGCGUaa--GUagUGGCUgGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 7402 0.7 0.387475
Target:  5'- aGGCCCGCAUg-GUCGCguuCGACCucGAa -3'
miRNA:   3'- aCCGGGCGUAagUAGUG---GCUGGucCU- -5'
26424 5' -56.7 NC_005345.2 + 7607 0.68 0.473802
Target:  5'- aGGCCgGUGUcggagcaCAUCGCCGACCcGGc -3'
miRNA:   3'- aCCGGgCGUAa------GUAGUGGCUGGuCCu -5'
26424 5' -56.7 NC_005345.2 + 9304 0.72 0.282432
Target:  5'- cGGCCgGCGUugaguUCGUCGgCGACCcGGGc -3'
miRNA:   3'- aCCGGgCGUA-----AGUAGUgGCUGGuCCU- -5'
26424 5' -56.7 NC_005345.2 + 10646 0.66 0.576379
Target:  5'- gGGCUCGCcaUgGUCgcccgggucggcgaGCCGAUCAGGGu -3'
miRNA:   3'- aCCGGGCGuaAgUAG--------------UGGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 10736 0.68 0.473802
Target:  5'- aUGGCCgCGCucgaugUCGUCGCCGACg---- -3'
miRNA:   3'- -ACCGG-GCGua----AGUAGUGGCUGguccu -5'
26424 5' -56.7 NC_005345.2 + 11185 0.7 0.361085
Target:  5'- aGGUCCGCAgccuggUCGaCGCCGGCCuguGGc -3'
miRNA:   3'- aCCGGGCGUa-----AGUaGUGGCUGGu--CCu -5'
26424 5' -56.7 NC_005345.2 + 11488 0.68 0.473802
Target:  5'- gGGCCgCGCAggCGgcccgCACCGACgCcGGAc -3'
miRNA:   3'- aCCGG-GCGUaaGUa----GUGGCUG-GuCCU- -5'
26424 5' -56.7 NC_005345.2 + 11808 0.66 0.610393
Target:  5'- aGGCUCGCuccgagacgggUCAUCGCCGucugCAGGu -3'
miRNA:   3'- aCCGGGCGua---------AGUAGUGGCug--GUCCu -5'
26424 5' -56.7 NC_005345.2 + 12260 0.7 0.361085
Target:  5'- aGGCCCGgcuCGUUCGgaccguaCGCCGACCuGGu -3'
miRNA:   3'- aCCGGGC---GUAAGUa------GUGGCUGGuCCu -5'
26424 5' -56.7 NC_005345.2 + 12323 0.68 0.463723
Target:  5'- cGGCCUGCAc----CGCCGGCCAGc- -3'
miRNA:   3'- aCCGGGCGUaaguaGUGGCUGGUCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.