miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26424 5' -56.7 NC_005345.2 + 43245 1.09 0.000592
Target:  5'- gUGGCCCGCAUUCAUCACCGACCAGGAg -3'
miRNA:   3'- -ACCGGGCGUAAGUAGUGGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 25290 0.81 0.069357
Target:  5'- gGGCUCGCcgUCGUC-CCGGCCGGGc -3'
miRNA:   3'- aCCGGGCGuaAGUAGuGGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 12818 0.79 0.092465
Target:  5'- cGGCCCGCcgGUUCGccugcgccgcaUCACCGGCgAGGAc -3'
miRNA:   3'- aCCGGGCG--UAAGU-----------AGUGGCUGgUCCU- -5'
26424 5' -56.7 NC_005345.2 + 6294 0.76 0.141144
Target:  5'- gGGgCCGCcUUCAUC-CCGGCCGGGu -3'
miRNA:   3'- aCCgGGCGuAAGUAGuGGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 14640 0.75 0.185661
Target:  5'- cGGCCCGCcUcgaccgcguccUCggCACCGGCCGGGc -3'
miRNA:   3'- aCCGGGCGuA-----------AGuaGUGGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 33518 0.73 0.235879
Target:  5'- cGGCCCcgacCGgugugUCAcCACCGACCGGGGc -3'
miRNA:   3'- aCCGGGc---GUa----AGUaGUGGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 46417 0.73 0.248485
Target:  5'- cGGgCCGCugUCAUCGCCGGgCGGGc -3'
miRNA:   3'- aCCgGGCGuaAGUAGUGGCUgGUCCu -5'
26424 5' -56.7 NC_005345.2 + 38126 0.73 0.248485
Target:  5'- gGGCCC-----CGUCAUCGACCGGGAa -3'
miRNA:   3'- aCCGGGcguaaGUAGUGGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 45379 0.72 0.261641
Target:  5'- gGGUCCGCGUUCAccUCGgCCGuCCAGcGGa -3'
miRNA:   3'- aCCGGGCGUAAGU--AGU-GGCuGGUC-CU- -5'
26424 5' -56.7 NC_005345.2 + 6419 0.72 0.27466
Target:  5'- gGGCCCGCcgUCggucggcgagugGUCGCCGauauccaGCCGGGu -3'
miRNA:   3'- aCCGGGCGuaAG------------UAGUGGC-------UGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 48367 0.72 0.27466
Target:  5'- gGGCCCGgucggCAUCccccgccGCCGGCCGGGGc -3'
miRNA:   3'- aCCGGGCguaa-GUAG-------UGGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 9304 0.72 0.282432
Target:  5'- cGGCCgGCGUugaguUCGUCGgCGACCcGGGc -3'
miRNA:   3'- aCCGGgCGUA-----AGUAGUgGCUGGuCCU- -5'
26424 5' -56.7 NC_005345.2 + 7353 0.72 0.289647
Target:  5'- gUGGCCCGCGguggCGcaGCCGGgCGGGGg -3'
miRNA:   3'- -ACCGGGCGUaa--GUagUGGCUgGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 17508 0.71 0.297006
Target:  5'- cGGgCCGCcg--GUCGCCGGCCGGGc -3'
miRNA:   3'- aCCgGGCGuaagUAGUGGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 43913 0.71 0.30451
Target:  5'- cGGCgCGCAgcgCGUCGgCGAUCAGGc -3'
miRNA:   3'- aCCGgGCGUaa-GUAGUgGCUGGUCCu -5'
26424 5' -56.7 NC_005345.2 + 30903 0.71 0.30451
Target:  5'- cGGCCgGCGagCAgCACCGggACCAGGGc -3'
miRNA:   3'- aCCGGgCGUaaGUaGUGGC--UGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 26260 0.71 0.30451
Target:  5'- cGGCaCGCucUCGUCGaCGACCAGGAc -3'
miRNA:   3'- aCCGgGCGuaAGUAGUgGCUGGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 28164 0.71 0.327889
Target:  5'- cGGUCgGCGUUCcUCGCCGcgGCCAaGGGg -3'
miRNA:   3'- aCCGGgCGUAAGuAGUGGC--UGGU-CCU- -5'
26424 5' -56.7 NC_005345.2 + 6023 0.71 0.335972
Target:  5'- cGGCCgGCcgUUGggcCACCGGuCCGGGAc -3'
miRNA:   3'- aCCGGgCGuaAGUa--GUGGCU-GGUCCU- -5'
26424 5' -56.7 NC_005345.2 + 30426 0.7 0.344199
Target:  5'- aUGGCgCGCca-CAUC-CCGACCGGGc -3'
miRNA:   3'- -ACCGgGCGuaaGUAGuGGCUGGUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.