miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26426 3' -61.1 NC_005345.2 + 9725 0.72 0.183655
Target:  5'- gUCGCCGGGGUCgagCgGguCGGCCUCGa -3'
miRNA:   3'- gGGCGGCCUCGGa--GgUguGCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 11573 0.66 0.415247
Target:  5'- gCCCGCCuGcAGCCcgCCuGCGCccGCCUCGg -3'
miRNA:   3'- -GGGCGGcC-UCGGa-GG-UGUGc-UGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 12820 0.7 0.230864
Target:  5'- gCCCGCCGGuucGCCUgcgCCGCAUcACCggCGa -3'
miRNA:   3'- -GGGCGGCCu--CGGA---GGUGUGcUGGa-GC- -5'
26426 3' -61.1 NC_005345.2 + 12881 0.67 0.375262
Target:  5'- gCCGCCGGguGGCCgcucgccucgaucgCCGCgACGGCCg-- -3'
miRNA:   3'- gGGCGGCC--UCGGa-------------GGUG-UGCUGGagc -5'
26426 3' -61.1 NC_005345.2 + 13302 0.68 0.331757
Target:  5'- cCCCGCCcgaaccGAGCCacCCGcCGCGcCCUCGc -3'
miRNA:   3'- -GGGCGGc-----CUCGGa-GGU-GUGCuGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 14066 0.69 0.267743
Target:  5'- aCCGCCGaGAaCCUgCAgCACGuCCUCGa -3'
miRNA:   3'- gGGCGGC-CUcGGAgGU-GUGCuGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 14227 0.67 0.37191
Target:  5'- cCUCGCCGccGcCCUCgCGCACGcCCUCu -3'
miRNA:   3'- -GGGCGGCcuC-GGAG-GUGUGCuGGAGc -5'
26426 3' -61.1 NC_005345.2 + 14848 0.67 0.37191
Target:  5'- gCuuGCCGGgcugcagcgGGCgCUCgACGCGGCCgaggCGa -3'
miRNA:   3'- -GggCGGCC---------UCG-GAGgUGUGCUGGa---GC- -5'
26426 3' -61.1 NC_005345.2 + 15420 0.68 0.316613
Target:  5'- aCUCGCCGuAGCC-CUugGCGuacACCUCGc -3'
miRNA:   3'- -GGGCGGCcUCGGaGGugUGC---UGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 15642 0.66 0.406333
Target:  5'- aCCgGUCGGGGCCgcaAUGCGACCg-- -3'
miRNA:   3'- -GGgCGGCCUCGGaggUGUGCUGGagc -5'
26426 3' -61.1 NC_005345.2 + 16168 0.66 0.397541
Target:  5'- -aCGCCGuaGGUCUCgCGCAgguCGGCCUCGa -3'
miRNA:   3'- ggGCGGCc-UCGGAG-GUGU---GCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 17223 0.75 0.105328
Target:  5'- aCCCGCC-GAGCUUgUACuCGACCUCGc -3'
miRNA:   3'- -GGGCGGcCUCGGAgGUGuGCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 17696 0.66 0.415247
Target:  5'- aCCCGCacccCGGcGCCUCgCACccGCGcucauCCUCGg -3'
miRNA:   3'- -GGGCG----GCCuCGGAG-GUG--UGCu----GGAGC- -5'
26426 3' -61.1 NC_005345.2 + 17960 0.72 0.174394
Target:  5'- gUCCGCuCGGccGCCUgCCGggcCGCGGCCUCGa -3'
miRNA:   3'- -GGGCG-GCCu-CGGA-GGU---GUGCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 18278 0.69 0.287904
Target:  5'- gCCCGCaccCGGAGCaC-CCGCGCGcuguucguCCUCGc -3'
miRNA:   3'- -GGGCG---GCCUCG-GaGGUGUGCu-------GGAGC- -5'
26426 3' -61.1 NC_005345.2 + 18973 0.68 0.309238
Target:  5'- gCUCGCCGcauGGGUCgCCGCuggccggcgggACGACCUCGa -3'
miRNA:   3'- -GGGCGGC---CUCGGaGGUG-----------UGCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 19116 0.7 0.242656
Target:  5'- cCCaCGCgUGGGcGCCgaUCCGCucgGCGACCUCGg -3'
miRNA:   3'- -GG-GCG-GCCU-CGG--AGGUG---UGCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 20291 0.74 0.134087
Target:  5'- gCCCGCCGaaGAGCCcCCGgACGACUgCGg -3'
miRNA:   3'- -GGGCGGC--CUCGGaGGUgUGCUGGaGC- -5'
26426 3' -61.1 NC_005345.2 + 21192 0.72 0.16948
Target:  5'- aCCGCCGuucGGGUucacgcgCUCCGC-CGACCUCGa -3'
miRNA:   3'- gGGCGGC---CUCG-------GAGGUGuGCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 21593 0.67 0.353035
Target:  5'- gCCGCCGGgguccgacgAGCCgaugCCGCGgGugaucgccgcgugcGCCUCGg -3'
miRNA:   3'- gGGCGGCC---------UCGGa---GGUGUgC--------------UGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.