miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26426 3' -61.1 NC_005345.2 + 2156 0.68 0.309238
Target:  5'- gCuuGCC-GAGCUUCCACGCguuGACCguggCGg -3'
miRNA:   3'- -GggCGGcCUCGGAGGUGUG---CUGGa---GC- -5'
26426 3' -61.1 NC_005345.2 + 2752 0.74 0.134087
Target:  5'- gCCCGCauguGGAGCgCgCCACgcgcgGCGGCCUCGg -3'
miRNA:   3'- -GGGCGg---CCUCG-GaGGUG-----UGCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 3078 0.67 0.388872
Target:  5'- cCCCGgCGGccccGGCCgCCugAuCGACcCUCGg -3'
miRNA:   3'- -GGGCgGCC----UCGGaGGugU-GCUG-GAGC- -5'
26426 3' -61.1 NC_005345.2 + 3455 0.69 0.287904
Target:  5'- gCCCGCCGGGaCCugUCCACggucGCGAUC-CGg -3'
miRNA:   3'- -GGGCGGCCUcGG--AGGUG----UGCUGGaGC- -5'
26426 3' -61.1 NC_005345.2 + 3566 0.66 0.442691
Target:  5'- aCCCGuUCGcGGCCcccggCCGCAaccggcccgcccCGACCUCGg -3'
miRNA:   3'- -GGGC-GGCcUCGGa----GGUGU------------GCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 3749 0.66 0.442691
Target:  5'- gCCUGUCGGAcuGgCUCCGCugGACg--- -3'
miRNA:   3'- -GGGCGGCCU--CgGAGGUGugCUGgagc -5'
26426 3' -61.1 NC_005345.2 + 3951 0.69 0.261281
Target:  5'- gCgGCCGGcAGCCUCuCGgGCGGCauaCUCGg -3'
miRNA:   3'- gGgCGGCC-UCGGAG-GUgUGCUG---GAGC- -5'
26426 3' -61.1 NC_005345.2 + 4002 0.66 0.442691
Target:  5'- gCUCGUCGaGAGCaacaUUCACgACGuCCUCGa -3'
miRNA:   3'- -GGGCGGC-CUCGg---AGGUG-UGCuGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 4940 0.67 0.380328
Target:  5'- uCCgGCCGGguggcGGUCacggagacCCACACGugCUCGc -3'
miRNA:   3'- -GGgCGGCC-----UCGGa-------GGUGUGCugGAGC- -5'
26426 3' -61.1 NC_005345.2 + 5187 0.68 0.308508
Target:  5'- gCCGCCGG-GCUgcacgcaUCgGCACGGCCggccCGg -3'
miRNA:   3'- gGGCGGCCuCGG-------AGgUGUGCUGGa---GC- -5'
26426 3' -61.1 NC_005345.2 + 5530 0.66 0.405449
Target:  5'- cCCCGCCGGggGGCCcgaCCugAucagcgugacgaaCGuCCUCGg -3'
miRNA:   3'- -GGGCGGCC--UCGGa--GGugU-------------GCuGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 5837 0.7 0.254947
Target:  5'- gCCCGCUGGuuccGGCUguggCGCGuCGACCUCGc -3'
miRNA:   3'- -GGGCGGCC----UCGGag--GUGU-GCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 6741 0.68 0.316613
Target:  5'- gCCGCCGGuGaggucaCUCCACAgguUGAUCUUGu -3'
miRNA:   3'- gGGCGGCCuCg-----GAGGUGU---GCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 7040 0.67 0.392325
Target:  5'- aCCgGCCGGcgaucgaggcggcccGGCCggaCUACGCGGCCg-- -3'
miRNA:   3'- -GGgCGGCC---------------UCGGa--GGUGUGCUGGagc -5'
26426 3' -61.1 NC_005345.2 + 7717 0.66 0.415247
Target:  5'- gCCGCCGGuacgagcuGCCgcugCUGCAgGACCggcUCGa -3'
miRNA:   3'- gGGCGGCCu-------CGGa---GGUGUgCUGG---AGC- -5'
26426 3' -61.1 NC_005345.2 + 7849 0.66 0.433428
Target:  5'- gCCGCCGGcGCCggcaCCGagGCGGCCcCa -3'
miRNA:   3'- gGGCGGCCuCGGa---GGUg-UGCUGGaGc -5'
26426 3' -61.1 NC_005345.2 + 8754 0.66 0.442691
Target:  5'- aCgCGUCGGcgguguGGCUggcgugCCACACGACC-CGg -3'
miRNA:   3'- -GgGCGGCC------UCGGa-----GGUGUGCUGGaGC- -5'
26426 3' -61.1 NC_005345.2 + 8956 0.66 0.406333
Target:  5'- gCUGCC-GAGCUgcaCGC-CGGCCUCGa -3'
miRNA:   3'- gGGCGGcCUCGGag-GUGuGCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 9604 0.69 0.287903
Target:  5'- aCCgGCCgcGGGGCCggUGCACGACCUg- -3'
miRNA:   3'- -GGgCGG--CCUCGGagGUGUGCUGGAgc -5'
26426 3' -61.1 NC_005345.2 + 9710 0.72 0.174394
Target:  5'- gCCGCCGcguGAGCCgcgCCGCGCgGGCCgCGa -3'
miRNA:   3'- gGGCGGC---CUCGGa--GGUGUG-CUGGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.