Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26426 | 3' | -61.1 | NC_005345.2 | + | 44702 | 1.1 | 0.000245 |
Target: 5'- cCCCGCCGGAGCCUCCACACGACCUCGa -3' miRNA: 3'- -GGGCGGCCUCGGAGGUGUGCUGGAGC- -5' |
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26426 | 3' | -61.1 | NC_005345.2 | + | 18278 | 0.69 | 0.287904 |
Target: 5'- gCCCGCaccCGGAGCaC-CCGCGCGcuguucguCCUCGc -3' miRNA: 3'- -GGGCG---GCCUCG-GaGGUGUGCu-------GGAGC- -5' |
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26426 | 3' | -61.1 | NC_005345.2 | + | 31304 | 0.69 | 0.294884 |
Target: 5'- uCCCGCCGGGcGCUgCUGCGCGGUCUgGa -3' miRNA: 3'- -GGGCGGCCU-CGGaGGUGUGCUGGAgC- -5' |
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26426 | 3' | -61.1 | NC_005345.2 | + | 3566 | 0.66 | 0.442691 |
Target: 5'- aCCCGuUCGcGGCCcccggCCGCAaccggcccgcccCGACCUCGg -3' miRNA: 3'- -GGGC-GGCcUCGGa----GGUGU------------GCUGGAGC- -5' |
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26426 | 3' | -61.1 | NC_005345.2 | + | 45326 | 0.72 | 0.161282 |
Target: 5'- uCCgaGCCGGcgAGCUgCUGCGCGGCCUCGa -3' miRNA: 3'- -GGg-CGGCC--UCGGaGGUGUGCUGGAGC- -5' |
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26426 | 3' | -61.1 | NC_005345.2 | + | 21192 | 0.72 | 0.16948 |
Target: 5'- aCCGCCGuucGGGUucacgcgCUCCGC-CGACCUCGa -3' miRNA: 3'- gGGCGGC---CUCG-------GAGGUGuGCUGGAGC- -5' |
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26426 | 3' | -61.1 | NC_005345.2 | + | 27174 | 0.72 | 0.188447 |
Target: 5'- uCCCGCCGGAggagGUCUaCCGC-CGGCCguUCGu -3' miRNA: 3'- -GGGCGGCCU----CGGA-GGUGuGCUGG--AGC- -5' |
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26426 | 3' | -61.1 | NC_005345.2 | + | 30627 | 0.71 | 0.198362 |
Target: 5'- aCCGCCccGGAcGCCgacgCCGCGuacucgcuCGACCUCGa -3' miRNA: 3'- gGGCGG--CCU-CGGa---GGUGU--------GCUGGAGC- -5' |
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26426 | 3' | -61.1 | NC_005345.2 | + | 12820 | 0.7 | 0.230864 |
Target: 5'- gCCCGCCGGuucGCCUgcgCCGCAUcACCggCGa -3' miRNA: 3'- -GGGCGGCCu--CGGA---GGUGUGcUGGa-GC- -5' |
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26426 | 3' | -61.1 | NC_005345.2 | + | 14066 | 0.69 | 0.267743 |
Target: 5'- aCCGCCGaGAaCCUgCAgCACGuCCUCGa -3' miRNA: 3'- gGGCGGC-CUcGGAgGU-GUGCuGGAGC- -5' |
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26426 | 3' | -61.1 | NC_005345.2 | + | 42855 | 0.7 | 0.236699 |
Target: 5'- aCCCgGCCGGgaugaaggcGGCC-CCGCACGugCUg- -3' miRNA: 3'- -GGG-CGGCC---------UCGGaGGUGUGCugGAgc -5' |
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26426 | 3' | -61.1 | NC_005345.2 | + | 30926 | 0.7 | 0.22515 |
Target: 5'- aCCGCCGGcGGCCgCUcacgguGCACGGCCgCGa -3' miRNA: 3'- gGGCGGCC-UCGGaGG------UGUGCUGGaGC- -5' |
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26426 | 3' | -61.1 | NC_005345.2 | + | 17223 | 0.75 | 0.105328 |
Target: 5'- aCCCGCC-GAGCUUgUACuCGACCUCGc -3' miRNA: 3'- -GGGCGGcCUCGGAgGUGuGCUGGAGC- -5' |
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26426 | 3' | -61.1 | NC_005345.2 | + | 5837 | 0.7 | 0.254947 |
Target: 5'- gCCCGCUGGuuccGGCUguggCGCGuCGACCUCGc -3' miRNA: 3'- -GGGCGGCC----UCGGag--GUGU-GCUGGAGC- -5' |
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26426 | 3' | -61.1 | NC_005345.2 | + | 20291 | 0.74 | 0.134087 |
Target: 5'- gCCCGCCGaaGAGCCcCCGgACGACUgCGg -3' miRNA: 3'- -GGGCGGC--CUCGGaGGUgUGCUGGaGC- -5' |
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26426 | 3' | -61.1 | NC_005345.2 | + | 48196 | 0.71 | 0.198362 |
Target: 5'- uCCUGCUcggGGAGCa-CCuaguGCGCGACCUCGa -3' miRNA: 3'- -GGGCGG---CCUCGgaGG----UGUGCUGGAGC- -5' |
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26426 | 3' | -61.1 | NC_005345.2 | + | 31588 | 0.69 | 0.261281 |
Target: 5'- cUCUGCCGG-GCCcugcUCgGCGCGGCCcgCGg -3' miRNA: 3'- -GGGCGGCCuCGG----AGgUGUGCUGGa-GC- -5' |
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26426 | 3' | -61.1 | NC_005345.2 | + | 3455 | 0.69 | 0.287904 |
Target: 5'- gCCCGCCGGGaCCugUCCACggucGCGAUC-CGg -3' miRNA: 3'- -GGGCGGCCUcGG--AGGUG----UGCUGGaGC- -5' |
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26426 | 3' | -61.1 | NC_005345.2 | + | 43676 | 0.73 | 0.141395 |
Target: 5'- gCCGCCGGguggcugaucAGCCUcgCCGCGugggcCGGCCUCGa -3' miRNA: 3'- gGGCGGCC----------UCGGA--GGUGU-----GCUGGAGC- -5' |
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26426 | 3' | -61.1 | NC_005345.2 | + | 9710 | 0.72 | 0.174394 |
Target: 5'- gCCGCCGcguGAGCCgcgCCGCGCgGGCCgCGa -3' miRNA: 3'- gGGCGGC---CUCGGa--GGUGUG-CUGGaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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