miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26426 3' -61.1 NC_005345.2 + 42102 0.66 0.44269
Target:  5'- uCCgGCCGGGccGCCUCgauCGC-CGGCCggUCGa -3'
miRNA:   3'- -GGgCGGCCU--CGGAG---GUGuGCUGG--AGC- -5'
26426 3' -61.1 NC_005345.2 + 16168 0.66 0.397541
Target:  5'- -aCGCCGuaGGUCUCgCGCAgguCGGCCUCGa -3'
miRNA:   3'- ggGCGGCc-UCGGAG-GUGU---GCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 40533 0.66 0.397541
Target:  5'- gCCGCCGGAacguucgugaucGCCgagCUGCcCGACCUg- -3'
miRNA:   3'- gGGCGGCCU------------CGGa--GGUGuGCUGGAgc -5'
26426 3' -61.1 NC_005345.2 + 3566 0.66 0.442691
Target:  5'- aCCCGuUCGcGGCCcccggCCGCAaccggcccgcccCGACCUCGg -3'
miRNA:   3'- -GGGC-GGCcUCGGa----GGUGU------------GCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 5530 0.66 0.405449
Target:  5'- cCCCGCCGGggGGCCcgaCCugAucagcgugacgaaCGuCCUCGg -3'
miRNA:   3'- -GGGCGGCC--UCGGa--GGugU-------------GCuGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 15642 0.66 0.406333
Target:  5'- aCCgGUCGGGGCCgcaAUGCGACCg-- -3'
miRNA:   3'- -GGgCGGCCUCGGaggUGUGCUGGagc -5'
26426 3' -61.1 NC_005345.2 + 7717 0.66 0.415247
Target:  5'- gCCGCCGGuacgagcuGCCgcugCUGCAgGACCggcUCGa -3'
miRNA:   3'- gGGCGGCCu-------CGGa---GGUGUgCUGG---AGC- -5'
26426 3' -61.1 NC_005345.2 + 22781 0.66 0.415247
Target:  5'- aCCuCgGGAGggaUCCGCGCGAuCCUCGg -3'
miRNA:   3'- gGGcGgCCUCgg-AGGUGUGCU-GGAGC- -5'
26426 3' -61.1 NC_005345.2 + 35557 0.66 0.406333
Target:  5'- gCCGCCuucGGGCUcgCCcgggACGCGAUCUCGa -3'
miRNA:   3'- gGGCGGc--CUCGGa-GG----UGUGCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 8956 0.66 0.406333
Target:  5'- gCUGCC-GAGCUgcaCGC-CGGCCUCGa -3'
miRNA:   3'- gGGCGGcCUCGGag-GUGuGCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 24201 0.66 0.406333
Target:  5'- gCCCGUCGGGGCCgaguucgagUCGCgGCGGCUg-- -3'
miRNA:   3'- -GGGCGGCCUCGGa--------GGUG-UGCUGGagc -5'
26426 3' -61.1 NC_005345.2 + 31974 0.66 0.415247
Target:  5'- gCgGCUGGuacGGCCUCgGguuCGACCUCGa -3'
miRNA:   3'- gGgCGGCC---UCGGAGgUgu-GCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 36283 0.66 0.44269
Target:  5'- aCCCGgCGGcgAGCCacCCcCACGACgUCa -3'
miRNA:   3'- -GGGCgGCC--UCGGa-GGuGUGCUGgAGc -5'
26426 3' -61.1 NC_005345.2 + 34549 0.66 0.441759
Target:  5'- aCCCGucgauCCGGAGCCgcuccgCCuuguguagugccgACACGGCCg-- -3'
miRNA:   3'- -GGGC-----GGCCUCGGa-----GG-------------UGUGCUGGagc -5'
26426 3' -61.1 NC_005345.2 + 37547 0.66 0.433428
Target:  5'- uCCCGCCaGcGGCCgccCCACGCcACCgCGa -3'
miRNA:   3'- -GGGCGGcC-UCGGa--GGUGUGcUGGaGC- -5'
26426 3' -61.1 NC_005345.2 + 7849 0.66 0.433428
Target:  5'- gCCGCCGGcGCCggcaCCGagGCGGCCcCa -3'
miRNA:   3'- gGGCGGCCuCGGa---GGUg-UGCUGGaGc -5'
26426 3' -61.1 NC_005345.2 + 25548 0.66 0.433428
Target:  5'- gUCCGCCGGcGUCgcgCCGaacgcCGCGACC-CGc -3'
miRNA:   3'- -GGGCGGCCuCGGa--GGU-----GUGCUGGaGC- -5'
26426 3' -61.1 NC_005345.2 + 34260 0.66 0.424279
Target:  5'- gCCCGCUGcuccGCCUCgGCcCGacucGCCUCGg -3'
miRNA:   3'- -GGGCGGCcu--CGGAGgUGuGC----UGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 25715 0.66 0.424279
Target:  5'- aCUCGCgGGuGCgCUcgggCCACACGAaCUCGa -3'
miRNA:   3'- -GGGCGgCCuCG-GA----GGUGUGCUgGAGC- -5'
26426 3' -61.1 NC_005345.2 + 11573 0.66 0.415247
Target:  5'- gCCCGCCuGcAGCCcgCCuGCGCccGCCUCGg -3'
miRNA:   3'- -GGGCGGcC-UCGGa-GG-UGUGc-UGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.