miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26426 3' -61.1 NC_005345.2 + 44702 1.1 0.000245
Target:  5'- cCCCGCCGGAGCCUCCACACGACCUCGa -3'
miRNA:   3'- -GGGCGGCCUCGGAGGUGUGCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 46085 0.77 0.073869
Target:  5'- gCCGCCGGGGCCugcgcggacaUCCACgcgGCGACCcugUCGg -3'
miRNA:   3'- gGGCGGCCUCGG----------AGGUG---UGCUGG---AGC- -5'
26426 3' -61.1 NC_005345.2 + 35556 0.76 0.097104
Target:  5'- aCCGCCGGcgGGUCgagCCACACGAUCUUc -3'
miRNA:   3'- gGGCGGCC--UCGGa--GGUGUGCUGGAGc -5'
26426 3' -61.1 NC_005345.2 + 17223 0.75 0.105328
Target:  5'- aCCCGCC-GAGCUUgUACuCGACCUCGc -3'
miRNA:   3'- -GGGCGGcCUCGGAgGUGuGCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 20291 0.74 0.134087
Target:  5'- gCCCGCCGaaGAGCCcCCGgACGACUgCGg -3'
miRNA:   3'- -GGGCGGC--CUCGGaGGUgUGCUGGaGC- -5'
26426 3' -61.1 NC_005345.2 + 2752 0.74 0.134087
Target:  5'- gCCCGCauguGGAGCgCgCCACgcgcgGCGGCCUCGg -3'
miRNA:   3'- -GGGCGg---CCUCG-GaGGUG-----UGCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 43676 0.73 0.141395
Target:  5'- gCCGCCGGguggcugaucAGCCUcgCCGCGugggcCGGCCUCGa -3'
miRNA:   3'- gGGCGGCC----------UCGGA--GGUGU-----GCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 45326 0.72 0.161282
Target:  5'- uCCgaGCCGGcgAGCUgCUGCGCGGCCUCGa -3'
miRNA:   3'- -GGg-CGGCC--UCGGaGGUGUGCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 21192 0.72 0.16948
Target:  5'- aCCGCCGuucGGGUucacgcgCUCCGC-CGACCUCGa -3'
miRNA:   3'- gGGCGGC---CUCG-------GAGGUGuGCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 17960 0.72 0.174394
Target:  5'- gUCCGCuCGGccGCCUgCCGggcCGCGGCCUCGa -3'
miRNA:   3'- -GGGCG-GCCu-CGGA-GGU---GUGCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 9710 0.72 0.174394
Target:  5'- gCCGCCGcguGAGCCgcgCCGCGCgGGCCgCGa -3'
miRNA:   3'- gGGCGGC---CUCGGa--GGUGUG-CUGGaGC- -5'
26426 3' -61.1 NC_005345.2 + 9725 0.72 0.183655
Target:  5'- gUCGCCGGGGUCgagCgGguCGGCCUCGa -3'
miRNA:   3'- gGGCGGCCUCGGa--GgUguGCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 27174 0.72 0.188447
Target:  5'- uCCCGCCGGAggagGUCUaCCGC-CGGCCguUCGu -3'
miRNA:   3'- -GGGCGGCCU----CGGA-GGUGuGCUGG--AGC- -5'
26426 3' -61.1 NC_005345.2 + 33124 0.71 0.193349
Target:  5'- aCUCGCCGcGGGUCUCacccuCGCGgGCCUCGg -3'
miRNA:   3'- -GGGCGGC-CUCGGAGgu---GUGC-UGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 48196 0.71 0.198362
Target:  5'- uCCUGCUcggGGAGCa-CCuaguGCGCGACCUCGa -3'
miRNA:   3'- -GGGCGG---CCUCGgaGG----UGUGCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 30627 0.71 0.198362
Target:  5'- aCCGCCccGGAcGCCgacgCCGCGuacucgcuCGACCUCGa -3'
miRNA:   3'- gGGCGG--CCU-CGGa---GGUGU--------GCUGGAGC- -5'
26426 3' -61.1 NC_005345.2 + 30926 0.7 0.22515
Target:  5'- aCCGCCGGcGGCCgCUcacgguGCACGGCCgCGa -3'
miRNA:   3'- gGGCGGCC-UCGGaGG------UGUGCUGGaGC- -5'
26426 3' -61.1 NC_005345.2 + 33033 0.7 0.230864
Target:  5'- gCCGCCGGccGGCCgcugCUcacaugGCGCGAgCUCGg -3'
miRNA:   3'- gGGCGGCC--UCGGa---GG------UGUGCUgGAGC- -5'
26426 3' -61.1 NC_005345.2 + 12820 0.7 0.230864
Target:  5'- gCCCGCCGGuucGCCUgcgCCGCAUcACCggCGa -3'
miRNA:   3'- -GGGCGGCCu--CGGA---GGUGUGcUGGa-GC- -5'
26426 3' -61.1 NC_005345.2 + 42855 0.7 0.236699
Target:  5'- aCCCgGCCGGgaugaaggcGGCC-CCGCACGugCUg- -3'
miRNA:   3'- -GGG-CGGCC---------UCGGaGGUGUGCugGAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.