miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26426 5' -55.1 NC_005345.2 + 35751 0.66 0.701744
Target:  5'- cGGCGCAGgaCGaACcGGCggGGCGGGGc -3'
miRNA:   3'- -CCGUGUCgaGCgUGaCUGa-CUGUCCU- -5'
26426 5' -55.1 NC_005345.2 + 19246 0.66 0.701744
Target:  5'- aGGUuCGGCUCGCGCagGAC---CGGGAu -3'
miRNA:   3'- -CCGuGUCGAGCGUGa-CUGacuGUCCU- -5'
26426 5' -55.1 NC_005345.2 + 26083 0.66 0.695159
Target:  5'- cGGCACGGCagacagcggcgaugUGCAC-GACcucGGCGGGAu -3'
miRNA:   3'- -CCGUGUCGa-------------GCGUGaCUGa--CUGUCCU- -5'
26426 5' -55.1 NC_005345.2 + 16286 0.66 0.690755
Target:  5'- cGGCuGCAGCUUGUACUG-C-GGCAGc- -3'
miRNA:   3'- -CCG-UGUCGAGCGUGACuGaCUGUCcu -5'
26426 5' -55.1 NC_005345.2 + 25689 0.66 0.679709
Target:  5'- cGGCu--GCUCGCGCUcGGCgUGACcGGu -3'
miRNA:   3'- -CCGuguCGAGCGUGA-CUG-ACUGuCCu -5'
26426 5' -55.1 NC_005345.2 + 46017 0.66 0.679709
Target:  5'- cGGCACGGCUgUGCAgUGGCgccucGGCGcGAa -3'
miRNA:   3'- -CCGUGUCGA-GCGUgACUGa----CUGUcCU- -5'
26426 5' -55.1 NC_005345.2 + 36794 0.66 0.679709
Target:  5'- cGGCACAGC-CGCAgCgcaGCUGACGa-- -3'
miRNA:   3'- -CCGUGUCGaGCGU-Gac-UGACUGUccu -5'
26426 5' -55.1 NC_005345.2 + 42553 0.66 0.679709
Target:  5'- cGGUccACAGCUCGUucgcCUG-C-GACAGGGg -3'
miRNA:   3'- -CCG--UGUCGAGCGu---GACuGaCUGUCCU- -5'
26426 5' -55.1 NC_005345.2 + 3451 0.66 0.668616
Target:  5'- gGGCcCcgAGCUCGCGCgGGCUGuCGGa- -3'
miRNA:   3'- -CCGuG--UCGAGCGUGaCUGACuGUCcu -5'
26426 5' -55.1 NC_005345.2 + 6804 0.66 0.656374
Target:  5'- cGCACAGUUgGUAUgcggcggacgccaUGGCgGGCGGGAu -3'
miRNA:   3'- cCGUGUCGAgCGUG-------------ACUGaCUGUCCU- -5'
26426 5' -55.1 NC_005345.2 + 22178 0.66 0.646335
Target:  5'- cGGCGCugggaucgGGUUCGUcCUcGACgggGACGGGAu -3'
miRNA:   3'- -CCGUG--------UCGAGCGuGA-CUGa--CUGUCCU- -5'
26426 5' -55.1 NC_005345.2 + 12928 0.66 0.646335
Target:  5'- cGGCAgcaGGCUCGCg--GACUGgcccaccauuuGCAGGGc -3'
miRNA:   3'- -CCGUg--UCGAGCGugaCUGAC-----------UGUCCU- -5'
26426 5' -55.1 NC_005345.2 + 25584 0.67 0.61284
Target:  5'- -cCGCAGCUCGgACgcGGCcGACAGGu -3'
miRNA:   3'- ccGUGUCGAGCgUGa-CUGaCUGUCCu -5'
26426 5' -55.1 NC_005345.2 + 12636 0.67 0.590578
Target:  5'- gGGCACcgggccucggAGCgggCGCACUGGCUGAa---- -3'
miRNA:   3'- -CCGUG----------UCGa--GCGUGACUGACUguccu -5'
26426 5' -55.1 NC_005345.2 + 11984 0.68 0.579497
Target:  5'- cGGguCGGCUCGCGau--CcGGCAGGAa -3'
miRNA:   3'- -CCguGUCGAGCGUgacuGaCUGUCCU- -5'
26426 5' -55.1 NC_005345.2 + 31466 0.68 0.579497
Target:  5'- cGGCGCGGUUCGUACgGAUcGAgcGGAu -3'
miRNA:   3'- -CCGUGUCGAGCGUGaCUGaCUguCCU- -5'
26426 5' -55.1 NC_005345.2 + 11589 0.68 0.578392
Target:  5'- gGGCGC--CUCGCGgUGgcguggggcggccGCUGGCGGGAg -3'
miRNA:   3'- -CCGUGucGAGCGUgAC-------------UGACUGUCCU- -5'
26426 5' -55.1 NC_005345.2 + 12456 0.68 0.535704
Target:  5'- cGCGCAGCUCGCGg-GGCaGGCgAGGc -3'
miRNA:   3'- cCGUGUCGAGCGUgaCUGaCUG-UCCu -5'
26426 5' -55.1 NC_005345.2 + 46670 0.68 0.524928
Target:  5'- uGUACAucgagcucGCUCGCGCgcagGACUgGGCAGGc -3'
miRNA:   3'- cCGUGU--------CGAGCGUGa---CUGA-CUGUCCu -5'
26426 5' -55.1 NC_005345.2 + 39849 0.69 0.48272
Target:  5'- cGGC-CGGC-CGCAC---CUGGCAGGAc -3'
miRNA:   3'- -CCGuGUCGaGCGUGacuGACUGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.