miRNA display CGI


Results 21 - 40 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26428 5' -53.9 NC_005345.2 + 8547 0.69 0.625547
Target:  5'- gGCACGcCgCUGAU-GACGUCcGUCGCgGg -3'
miRNA:   3'- -CGUGCuG-GACUAgCUGUAG-CAGCGgC- -5'
26428 5' -53.9 NC_005345.2 + 8704 0.66 0.795424
Target:  5'- -gGCGGCCcggcugUGGcCGACucgucCGUCGCCGg -3'
miRNA:   3'- cgUGCUGG------ACUaGCUGua---GCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 8880 0.72 0.426372
Target:  5'- uCACGGCCgggccgucGUCGACGUCGcCGUCGa -3'
miRNA:   3'- cGUGCUGGac------UAGCUGUAGCaGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 8966 0.66 0.813591
Target:  5'- gGCuCGACCUGucgcuccGUCGACGggCGUgUGCCu -3'
miRNA:   3'- -CGuGCUGGAC-------UAGCUGUa-GCA-GCGGc -5'
26428 5' -53.9 NC_005345.2 + 8970 0.67 0.75525
Target:  5'- cGC-CGGCCUcGAUCG-CAgcugCG-CGCCGu -3'
miRNA:   3'- -CGuGCUGGA-CUAGCuGUa---GCaGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 9184 0.75 0.313681
Target:  5'- uGUGCGAgCUGAUCGACGcCGgggUGCCGu -3'
miRNA:   3'- -CGUGCUgGACUAGCUGUaGCa--GCGGC- -5'
26428 5' -53.9 NC_005345.2 + 9301 0.66 0.765511
Target:  5'- uCGCGGCCggcGUUGAguUCGUCGgCGa -3'
miRNA:   3'- cGUGCUGGac-UAGCUguAGCAGCgGC- -5'
26428 5' -53.9 NC_005345.2 + 9588 0.72 0.455598
Target:  5'- cGCACGACCggccggGAcCGGCcgCGggGCCGg -3'
miRNA:   3'- -CGUGCUGGa-----CUaGCUGuaGCagCGGC- -5'
26428 5' -53.9 NC_005345.2 + 9621 0.7 0.570687
Target:  5'- uGCACGACCUGcUCGA--UCG--GCCGg -3'
miRNA:   3'- -CGUGCUGGACuAGCUguAGCagCGGC- -5'
26428 5' -53.9 NC_005345.2 + 10318 0.67 0.734361
Target:  5'- gGCA-GAgCgGAUcacCGAUGUCGUCGCCGu -3'
miRNA:   3'- -CGUgCUgGaCUA---GCUGUAGCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 10516 0.66 0.805067
Target:  5'- gGCAgGACggGAUcgccgaggcCGACGUCGagaUCGCCGu -3'
miRNA:   3'- -CGUgCUGgaCUA---------GCUGUAGC---AGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 10538 0.68 0.658605
Target:  5'- cGCAUGACCUGucCGGCG--GUgGCCGa -3'
miRNA:   3'- -CGUGCUGGACuaGCUGUagCAgCGGC- -5'
26428 5' -53.9 NC_005345.2 + 10722 0.76 0.256329
Target:  5'- aGCucguCGGCCgGAuggccgcgcUCGAUGUCGUCGCCGa -3'
miRNA:   3'- -CGu---GCUGGaCU---------AGCUGUAGCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 11083 0.7 0.581593
Target:  5'- cGCGCGGCCUGugggucacgGUCGGaaguuggGUCGCCGc -3'
miRNA:   3'- -CGUGCUGGAC---------UAGCUguag---CAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 12086 0.77 0.231023
Target:  5'- -aGCGACa-GAUCGACGaCGUCGCCGc -3'
miRNA:   3'- cgUGCUGgaCUAGCUGUaGCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 13260 0.68 0.658605
Target:  5'- gGCACGACCgg--CGAgCAgcUCGUCGgCGa -3'
miRNA:   3'- -CGUGCUGGacuaGCU-GU--AGCAGCgGC- -5'
26428 5' -53.9 NC_005345.2 + 13643 0.67 0.72801
Target:  5'- gGCGCGGCgUGAgcgcCGACGagcagcgcgccgcccUCGaCGCCGu -3'
miRNA:   3'- -CGUGCUGgACUa---GCUGU---------------AGCaGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 14409 0.67 0.734361
Target:  5'- uGCACGucgccgacgccuGCCgggcGAUCGAgGUCGcgcucugcucgcUCGCCGa -3'
miRNA:   3'- -CGUGC------------UGGa---CUAGCUgUAGC------------AGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 14663 0.67 0.744863
Target:  5'- gGCAcCGGCCgGG-CGGCGUCGccgaUGCCGg -3'
miRNA:   3'- -CGU-GCUGGaCUaGCUGUAGCa---GCGGC- -5'
26428 5' -53.9 NC_005345.2 + 15392 0.71 0.527647
Target:  5'- cGCAgggagucguUGACCUGGUCGA--UCGacUCGCCGu -3'
miRNA:   3'- -CGU---------GCUGGACUAGCUguAGC--AGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.