miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26428 5' -53.9 NC_005345.2 + 1273 0.71 0.496175
Target:  5'- aGCACG-CC-GGcCGACGUcacCGUCGCCGg -3'
miRNA:   3'- -CGUGCuGGaCUaGCUGUA---GCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 2666 0.71 0.527647
Target:  5'- gGC-CGACUUGAUCGGCGaggccgcgggCGUUGUCGa -3'
miRNA:   3'- -CGuGCUGGACUAGCUGUa---------GCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 2775 0.69 0.603521
Target:  5'- cGCgGCGGCCUcGGUaCGGCuuGUCGgCGCCGg -3'
miRNA:   3'- -CG-UGCUGGA-CUA-GCUG--UAGCaGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 3035 0.66 0.805067
Target:  5'- cGCuuCGACCc---CGACAggGUCGCCGc -3'
miRNA:   3'- -CGu-GCUGGacuaGCUGUagCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 3270 0.68 0.702284
Target:  5'- uGCA-GACCgUGAUCGACggCGUCGggcuccCCGc -3'
miRNA:   3'- -CGUgCUGG-ACUAGCUGuaGCAGC------GGC- -5'
26428 5' -53.9 NC_005345.2 + 3660 0.69 0.603521
Target:  5'- gGCAgCGGCCggGAUCG-UGUCGuUUGCCGg -3'
miRNA:   3'- -CGU-GCUGGa-CUAGCuGUAGC-AGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 3849 0.68 0.669588
Target:  5'- cGUGCgGACCcggcUGAUCGGCGUCGgCGUCc -3'
miRNA:   3'- -CGUG-CUGG----ACUAGCUGUAGCaGCGGc -5'
26428 5' -53.9 NC_005345.2 + 3892 0.67 0.744863
Target:  5'- aGCGCGGCgaGGgcggggCgGACGUCGUCGUa- -3'
miRNA:   3'- -CGUGCUGgaCUa-----G-CUGUAGCAGCGgc -5'
26428 5' -53.9 NC_005345.2 + 4319 0.75 0.313681
Target:  5'- aGguCGACCUGcgucUCGACAUCGgccgaGCCGg -3'
miRNA:   3'- -CguGCUGGACu---AGCUGUAGCag---CGGC- -5'
26428 5' -53.9 NC_005345.2 + 5134 0.69 0.640984
Target:  5'- gGUGCGGCaUGAgcgcCGACAccgugcacgagcgacUCGUCGCCGc -3'
miRNA:   3'- -CGUGCUGgACUa---GCUGU---------------AGCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 5228 0.69 0.59254
Target:  5'- gGC-CGGCCUGAUCGccgacgcgcuGCG-CGcCGCCGu -3'
miRNA:   3'- -CGuGCUGGACUAGC----------UGUaGCaGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 5323 0.69 0.647596
Target:  5'- aGUACGugaucaGCCUGAUCGACc-CGgaCGCCGa -3'
miRNA:   3'- -CGUGC------UGGACUAGCUGuaGCa-GCGGC- -5'
26428 5' -53.9 NC_005345.2 + 5772 0.66 0.814528
Target:  5'- -gGCGGuCCgcaGGUCGGCGUacgCGUCGaCCGg -3'
miRNA:   3'- cgUGCU-GGa--CUAGCUGUA---GCAGC-GGC- -5'
26428 5' -53.9 NC_005345.2 + 5858 0.76 0.263001
Target:  5'- cGCGuCGACCUcgccGAg-GACGUCGUCGCCa -3'
miRNA:   3'- -CGU-GCUGGA----CUagCUGUAGCAGCGGc -5'
26428 5' -53.9 NC_005345.2 + 6416 0.66 0.775635
Target:  5'- cGCGgGcccGCCgucGGUCGGCgaGUgGUCGCCGa -3'
miRNA:   3'- -CGUgC---UGGa--CUAGCUG--UAgCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 6687 0.69 0.636574
Target:  5'- -gACGGCC---UCGGCGUCGauaUCGCCGc -3'
miRNA:   3'- cgUGCUGGacuAGCUGUAGC---AGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 7005 0.66 0.814528
Target:  5'- -gAUGGCUgcugcGAUCGACGccggGUCGCCGg -3'
miRNA:   3'- cgUGCUGGa----CUAGCUGUag--CAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 7256 0.71 0.527647
Target:  5'- -gGCGGCCgaacCGACAagCGUCGCCGc -3'
miRNA:   3'- cgUGCUGGacuaGCUGUa-GCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 7468 0.71 0.475671
Target:  5'- cCGCGGCagcGAUCGACcUCGgCGCCGa -3'
miRNA:   3'- cGUGCUGga-CUAGCUGuAGCaGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 7606 0.74 0.337564
Target:  5'- cGCACGACgUcGUCGACcagGUCGCCGa -3'
miRNA:   3'- -CGUGCUGgAcUAGCUGuagCAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.