miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26428 5' -53.9 NC_005345.2 + 45614 1.12 0.000966
Target:  5'- uGCACGACCUGAUCGACAUCGUCGCCGg -3'
miRNA:   3'- -CGUGCUGGACUAGCUGUAGCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 41542 0.81 0.138113
Target:  5'- -gGCGACCUGGUCGACGaCGUCGUg- -3'
miRNA:   3'- cgUGCUGGACUAGCUGUaGCAGCGgc -5'
26428 5' -53.9 NC_005345.2 + 37731 0.78 0.213452
Target:  5'- gGCGCGGCgccggCUGGUCGGCGUCGUCgagGUCGa -3'
miRNA:   3'- -CGUGCUG-----GACUAGCUGUAGCAG---CGGC- -5'
26428 5' -53.9 NC_005345.2 + 19141 0.78 0.213452
Target:  5'- -gGCGACCUcGGccggGACGUCGUCGCCGg -3'
miRNA:   3'- cgUGCUGGA-CUag--CUGUAGCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 12086 0.77 0.231023
Target:  5'- -aGCGACa-GAUCGACGaCGUCGCCGc -3'
miRNA:   3'- cgUGCUGgaCUAGCUGUaGCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 10722 0.76 0.256329
Target:  5'- aGCucguCGGCCgGAuggccgcgcUCGAUGUCGUCGCCGa -3'
miRNA:   3'- -CGu---GCUGGaCU---------AGCUGUAGCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 5858 0.76 0.263001
Target:  5'- cGCGuCGACCUcgccGAg-GACGUCGUCGCCa -3'
miRNA:   3'- -CGU-GCUGGA----CUagCUGUAGCAGCGGc -5'
26428 5' -53.9 NC_005345.2 + 21182 0.76 0.269813
Target:  5'- uCGCGGCCucggccuugUGGUCGGgcuuguCGUCGUCGCCGg -3'
miRNA:   3'- cGUGCUGG---------ACUAGCU------GUAGCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 25492 0.76 0.276766
Target:  5'- cCGCGAcCCUGGUCGGCGcCGUcCGCCu -3'
miRNA:   3'- cGUGCU-GGACUAGCUGUaGCA-GCGGc -5'
26428 5' -53.9 NC_005345.2 + 34468 0.76 0.283862
Target:  5'- gGCACGGCCgGccCGGCAUCGgcgaCGCCGc -3'
miRNA:   3'- -CGUGCUGGaCuaGCUGUAGCa---GCGGC- -5'
26428 5' -53.9 NC_005345.2 + 34725 0.75 0.291101
Target:  5'- aGCGCGACCUcGAUCGcccgGCAggCGUCGgCGa -3'
miRNA:   3'- -CGUGCUGGA-CUAGC----UGUa-GCAGCgGC- -5'
26428 5' -53.9 NC_005345.2 + 22827 0.75 0.305251
Target:  5'- gGCACGAacggCUGAUCGACGacggucaUCccgGUCGCCGg -3'
miRNA:   3'- -CGUGCUg---GACUAGCUGU-------AG---CAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 35697 0.75 0.30601
Target:  5'- aGCACG-CC--GUCGGCGaCGUCGCCGg -3'
miRNA:   3'- -CGUGCuGGacUAGCUGUaGCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 9184 0.75 0.313681
Target:  5'- uGUGCGAgCUGAUCGACGcCGgggUGCCGu -3'
miRNA:   3'- -CGUGCUgGACUAGCUGUaGCa--GCGGC- -5'
26428 5' -53.9 NC_005345.2 + 4319 0.75 0.313681
Target:  5'- aGguCGACCUGcgucUCGACAUCGgccgaGCCGg -3'
miRNA:   3'- -CguGCUGGACu---AGCUGUAGCag---CGGC- -5'
26428 5' -53.9 NC_005345.2 + 7606 0.74 0.337564
Target:  5'- cGCACGACgUcGUCGACcagGUCGCCGa -3'
miRNA:   3'- -CGUGCUGgAcUAGCUGuagCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 43712 0.73 0.380238
Target:  5'- gGCcuCGACCUcGAUaCGAacgcCGUCGUCGCCGc -3'
miRNA:   3'- -CGu-GCUGGA-CUA-GCU----GUAGCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 20867 0.73 0.392816
Target:  5'- gGCGCGAgCUuGUCGACGagcuucgcgaucgcgUCGUCGUCGa -3'
miRNA:   3'- -CGUGCUgGAcUAGCUGU---------------AGCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 34070 0.73 0.397373
Target:  5'- cGCGCguucaaguucgagGACCUGAUCGAguUCcugCGCCGg -3'
miRNA:   3'- -CGUG-------------CUGGACUAGCUguAGca-GCGGC- -5'
26428 5' -53.9 NC_005345.2 + 8880 0.72 0.426372
Target:  5'- uCACGGCCgggccgucGUCGACGUCGcCGUCGa -3'
miRNA:   3'- cGUGCUGGac------UAGCUGUAGCaGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.