Results 1 - 20 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26428 | 5' | -53.9 | NC_005345.2 | + | 28028 | 0.66 | 0.814528 |
Target: 5'- cGCGCaGGCC---UCGACGUCGUCGa-- -3' miRNA: 3'- -CGUG-CUGGacuAGCUGUAGCAGCggc -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 28345 | 0.66 | 0.775635 |
Target: 5'- aGCGCGACacg--CGcCGUCGgCGCCGa -3' miRNA: 3'- -CGUGCUGgacuaGCuGUAGCaGCGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 26106 | 0.66 | 0.779643 |
Target: 5'- uGCACGACCucggcgggaugcagcUGGUCGAguUCG-C-CCGg -3' miRNA: 3'- -CGUGCUGG---------------ACUAGCUguAGCaGcGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 19688 | 0.66 | 0.814528 |
Target: 5'- aGUugGACCgGGcCGACGaguaccgccUCGaCGCCGa -3' miRNA: 3'- -CGugCUGGaCUaGCUGU---------AGCaGCGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 16608 | 0.66 | 0.765511 |
Target: 5'- gGCcCGACCcccUCGGCGUCGgcaugcaCGCCGu -3' miRNA: 3'- -CGuGCUGGacuAGCUGUAGCa------GCGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 24504 | 0.66 | 0.765511 |
Target: 5'- cGCGgGAuCCUGGUCGACcaccgCGaggCGCCc -3' miRNA: 3'- -CGUgCU-GGACUAGCUGua---GCa--GCGGc -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 34632 | 0.66 | 0.765511 |
Target: 5'- aGUACGggGCgUGGcugcugccgcUCGGCGUCGcggUCGCCGg -3' miRNA: 3'- -CGUGC--UGgACU----------AGCUGUAGC---AGCGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 27618 | 0.66 | 0.775635 |
Target: 5'- aGCACGGCgaGAUCGGuccgcugcUcgCGgucCGCCGa -3' miRNA: 3'- -CGUGCUGgaCUAGCU--------GuaGCa--GCGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 37622 | 0.66 | 0.772613 |
Target: 5'- -gGCGACCgaGAgcugaacgcguacgUCGAgacCGUCGUCGUCGa -3' miRNA: 3'- cgUGCUGGa-CU--------------AGCU---GUAGCAGCGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 18313 | 0.66 | 0.775635 |
Target: 5'- cGC-CGucGCaCUGGUCGGCGUCaccggCGCCGu -3' miRNA: 3'- -CGuGC--UG-GACUAGCUGUAGca---GCGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 18996 | 0.66 | 0.764491 |
Target: 5'- aGCcuCGGCCcGAgcggggcggcgccUCGACGUCGcCGCCc -3' miRNA: 3'- -CGu-GCUGGaCU-------------AGCUGUAGCaGCGGc -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 37444 | 0.66 | 0.775635 |
Target: 5'- -gGCGGCCcgcUGGUCGGcCGUCGaucCGCCu -3' miRNA: 3'- cgUGCUGG---ACUAGCU-GUAGCa--GCGGc -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 5772 | 0.66 | 0.814528 |
Target: 5'- -gGCGGuCCgcaGGUCGGCGUacgCGUCGaCCGg -3' miRNA: 3'- cgUGCU-GGa--CUAGCUGUA---GCAGC-GGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 24545 | 0.66 | 0.805067 |
Target: 5'- aGCACGcACCcgucgggaUGAUCG-CugcUGUCGCCGu -3' miRNA: 3'- -CGUGC-UGG--------ACUAGCuGua-GCAGCGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 27020 | 0.66 | 0.805067 |
Target: 5'- aGCGCGACCacGUCGACgaGUCugugcugcUCGCCa -3' miRNA: 3'- -CGUGCUGGacUAGCUG--UAGc-------AGCGGc -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 48762 | 0.66 | 0.795424 |
Target: 5'- uGCACGACCU--UCGccACGUguUCGCCa -3' miRNA: 3'- -CGUGCUGGAcuAGC--UGUAgcAGCGGc -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 29941 | 0.66 | 0.785609 |
Target: 5'- -gAgGACCgGcUCGACGUCGggGCCGu -3' miRNA: 3'- cgUgCUGGaCuAGCUGUAGCagCGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 38577 | 0.66 | 0.785609 |
Target: 5'- cGUACucguCCUcGGUCGGCAUCGUggcgagCGCCu -3' miRNA: 3'- -CGUGcu--GGA-CUAGCUGUAGCA------GCGGc -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 35553 | 0.66 | 0.784619 |
Target: 5'- gGCACcGCCggcgGGUCGAgccacacgaucuuCGUCG-CGCCGc -3' miRNA: 3'- -CGUGcUGGa---CUAGCU-------------GUAGCaGCGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 6416 | 0.66 | 0.775635 |
Target: 5'- cGCGgGcccGCCgucGGUCGGCgaGUgGUCGCCGa -3' miRNA: 3'- -CGUgC---UGGa--CUAGCUG--UAgCAGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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