miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26428 5' -53.9 NC_005345.2 + 45614 1.12 0.000966
Target:  5'- uGCACGACCUGAUCGACAUCGUCGCCGg -3'
miRNA:   3'- -CGUGCUGGACUAGCUGUAGCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 5228 0.69 0.59254
Target:  5'- gGC-CGGCCUGAUCGccgacgcgcuGCG-CGcCGCCGu -3'
miRNA:   3'- -CGuGCUGGACUAGC----------UGUaGCaGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 30205 0.69 0.603521
Target:  5'- cGC-CGACCacgaGAUCaACGUCGaCGCCGa -3'
miRNA:   3'- -CGuGCUGGa---CUAGcUGUAGCaGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 19688 0.66 0.814528
Target:  5'- aGUugGACCgGGcCGACGaguaccgccUCGaCGCCGa -3'
miRNA:   3'- -CGugCUGGaCUaGCUGU---------AGCaGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 9184 0.75 0.313681
Target:  5'- uGUGCGAgCUGAUCGACGcCGgggUGCCGu -3'
miRNA:   3'- -CGUGCUgGACUAGCUGUaGCa--GCGGC- -5'
26428 5' -53.9 NC_005345.2 + 7606 0.74 0.337564
Target:  5'- cGCACGACgUcGUCGACcagGUCGCCGa -3'
miRNA:   3'- -CGUGCUGgAcUAGCUGuagCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 48217 0.72 0.426372
Target:  5'- uGCGCGACCUcGA-CGACGU-GaCGCCGg -3'
miRNA:   3'- -CGUGCUGGA-CUaGCUGUAgCaGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 26949 0.72 0.445735
Target:  5'- uGCGCGACCggcUGAUCGGguUCGUCcUCGc -3'
miRNA:   3'- -CGUGCUGG---ACUAGCUguAGCAGcGGC- -5'
26428 5' -53.9 NC_005345.2 + 45344 0.71 0.475671
Target:  5'- uGCGCGGCCUcGAucugcccgUCGACGUgaUCGCCa -3'
miRNA:   3'- -CGUGCUGGA-CU--------AGCUGUAgcAGCGGc -5'
26428 5' -53.9 NC_005345.2 + 11083 0.7 0.581593
Target:  5'- cGCGCGGCCUGugggucacgGUCGGaaguuggGUCGCCGc -3'
miRNA:   3'- -CGUGCUGGAC---------UAGCUguag---CAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 37095 0.71 0.485872
Target:  5'- aGCGCGGgCUGAaccaggacgcgaUcCGGCAgcUCGUCGCCa -3'
miRNA:   3'- -CGUGCUgGACU------------A-GCUGU--AGCAGCGGc -5'
26428 5' -53.9 NC_005345.2 + 45410 0.72 0.455598
Target:  5'- cGCGCGAgUUcuUCGACcgCGUCGUCGa -3'
miRNA:   3'- -CGUGCUgGAcuAGCUGuaGCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 12086 0.77 0.231023
Target:  5'- -aGCGACa-GAUCGACGaCGUCGCCGc -3'
miRNA:   3'- cgUGCUGgaCUAGCUGUaGCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 41826 0.71 0.517068
Target:  5'- cGCACGGCauuGUCGACGcCGUCGCa- -3'
miRNA:   3'- -CGUGCUGgacUAGCUGUaGCAGCGgc -5'
26428 5' -53.9 NC_005345.2 + 10722 0.76 0.256329
Target:  5'- aGCucguCGGCCgGAuggccgcgcUCGAUGUCGUCGCCGa -3'
miRNA:   3'- -CGu---GCUGGaCU---------AGCUGUAGCAGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 29761 0.72 0.445735
Target:  5'- gGCGCGACgCUGcUCGGCA-CGacCGCCGa -3'
miRNA:   3'- -CGUGCUG-GACuAGCUGUaGCa-GCGGC- -5'
26428 5' -53.9 NC_005345.2 + 42704 0.71 0.517068
Target:  5'- gGCGCGACCcGGcUgGAUAUCGgcgaccacUCGCCGa -3'
miRNA:   3'- -CGUGCUGGaCU-AgCUGUAGC--------AGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 34105 0.69 0.603521
Target:  5'- cCGCGACgg---CGACAUCGcCGCCGa -3'
miRNA:   3'- cGUGCUGgacuaGCUGUAGCaGCGGC- -5'
26428 5' -53.9 NC_005345.2 + 5858 0.76 0.263001
Target:  5'- cGCGuCGACCUcgccGAg-GACGUCGUCGCCa -3'
miRNA:   3'- -CGU-GCUGGA----CUagCUGUAGCAGCGGc -5'
26428 5' -53.9 NC_005345.2 + 43712 0.73 0.380238
Target:  5'- gGCcuCGACCUcGAUaCGAacgcCGUCGUCGCCGc -3'
miRNA:   3'- -CGu-GCUGGA-CUA-GCU----GUAGCAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.