Results 21 - 40 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26428 | 5' | -53.9 | NC_005345.2 | + | 30474 | 0.69 | 0.625547 |
Target: 5'- cGCGCGAUCUGcGUCGcgGUgGUgCGCCGg -3' miRNA: 3'- -CGUGCUGGAC-UAGCugUAgCA-GCGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 30205 | 0.69 | 0.603521 |
Target: 5'- cGC-CGACCacgaGAUCaACGUCGaCGCCGa -3' miRNA: 3'- -CGuGCUGGa---CUAGcUGUAGCaGCGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 45410 | 0.72 | 0.455598 |
Target: 5'- cGCGCGAgUUcuUCGACcgCGUCGUCGa -3' miRNA: 3'- -CGUGCUgGAcuAGCUGuaGCAGCGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 5858 | 0.76 | 0.263001 |
Target: 5'- cGCGuCGACCUcgccGAg-GACGUCGUCGCCa -3' miRNA: 3'- -CGU-GCUGGA----CUagCUGUAGCAGCGGc -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 32024 | 0.67 | 0.71306 |
Target: 5'- uCGCGACCgcgcugGAUcCGGCAUgGcUGCCGg -3' miRNA: 3'- cGUGCUGGa-----CUA-GCUGUAgCaGCGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 13260 | 0.68 | 0.658605 |
Target: 5'- gGCACGACCgg--CGAgCAgcUCGUCGgCGa -3' miRNA: 3'- -CGUGCUGGacuaGCU-GU--AGCAGCgGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 5228 | 0.69 | 0.59254 |
Target: 5'- gGC-CGGCCUGAUCGccgacgcgcuGCG-CGcCGCCGu -3' miRNA: 3'- -CGuGCUGGACUAGC----------UGUaGCaGCGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 10722 | 0.76 | 0.256329 |
Target: 5'- aGCucguCGGCCgGAuggccgcgcUCGAUGUCGUCGCCGa -3' miRNA: 3'- -CGu---GCUGGaCU---------AGCUGUAGCAGCGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 38482 | 0.69 | 0.647596 |
Target: 5'- cGCACacCCUGAUCGGC----UCGCCGa -3' miRNA: 3'- -CGUGcuGGACUAGCUGuagcAGCGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 12086 | 0.77 | 0.231023 |
Target: 5'- -aGCGACa-GAUCGACGaCGUCGCCGc -3' miRNA: 3'- cgUGCUGgaCUAGCUGUaGCAGCGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 34105 | 0.69 | 0.603521 |
Target: 5'- cCGCGACgg---CGACAUCGcCGCCGa -3' miRNA: 3'- cGUGCUGgacuaGCUGUAGCaGCGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 39298 | 0.69 | 0.625547 |
Target: 5'- cCGCGuCCUGAUCaccucuGACGUCcugGUCGUCGa -3' miRNA: 3'- cGUGCuGGACUAG------CUGUAG---CAGCGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 41826 | 0.71 | 0.517068 |
Target: 5'- cGCACGGCauuGUCGACGcCGUCGCa- -3' miRNA: 3'- -CGUGCUGgacUAGCUGUaGCAGCGgc -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 45344 | 0.71 | 0.475671 |
Target: 5'- uGCGCGGCCUcGAucugcccgUCGACGUgaUCGCCa -3' miRNA: 3'- -CGUGCUGGA-CU--------AGCUGUAgcAGCGGc -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 48217 | 0.72 | 0.426372 |
Target: 5'- uGCGCGACCUcGA-CGACGU-GaCGCCGg -3' miRNA: 3'- -CGUGCUGGA-CUaGCUGUAgCaGCGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 9184 | 0.75 | 0.313681 |
Target: 5'- uGUGCGAgCUGAUCGACGcCGgggUGCCGu -3' miRNA: 3'- -CGUGCUgGACUAGCUGUaGCa--GCGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 30128 | 0.67 | 0.744863 |
Target: 5'- -gACGGCUcGGgcggCGACGUCGaggCGCCGc -3' miRNA: 3'- cgUGCUGGaCUa---GCUGUAGCa--GCGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 13643 | 0.67 | 0.72801 |
Target: 5'- gGCGCGGCgUGAgcgcCGACGagcagcgcgccgcccUCGaCGCCGu -3' miRNA: 3'- -CGUGCUGgACUa---GCUGU---------------AGCaGCGGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 3270 | 0.68 | 0.702284 |
Target: 5'- uGCA-GACCgUGAUCGACggCGUCGggcuccCCGc -3' miRNA: 3'- -CGUgCUGG-ACUAGCUGuaGCAGC------GGC- -5' |
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26428 | 5' | -53.9 | NC_005345.2 | + | 3849 | 0.68 | 0.669588 |
Target: 5'- cGUGCgGACCcggcUGAUCGGCGUCGgCGUCc -3' miRNA: 3'- -CGUG-CUGG----ACUAGCUGUAGCaGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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