miRNA display CGI


Results 41 - 60 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26429 3' -59.2 NC_005345.2 + 36352 0.66 0.504387
Target:  5'- gCCGAGCGgcUCGGgCGGGUcguugcgggugguccACgcgCGCCa -3'
miRNA:   3'- -GGCUCGUgcAGCUgGCCCG---------------UGa--GCGG- -5'
26429 3' -59.2 NC_005345.2 + 9079 0.66 0.500384
Target:  5'- uCCGGGCcgcCGUCG-CCGGcgaccgcccGCACgUCGCg -3'
miRNA:   3'- -GGCUCGu--GCAGCuGGCC---------CGUG-AGCGg -5'
26429 3' -59.2 NC_005345.2 + 46432 0.66 0.500384
Target:  5'- gCCGGGCggGCGggaGACaucGGCGC-CGCCg -3'
miRNA:   3'- -GGCUCG--UGCag-CUGgc-CCGUGaGCGG- -5'
26429 3' -59.2 NC_005345.2 + 4974 0.66 0.500384
Target:  5'- gCGGuGuCGCGgcCGAUCGGacgaacGCGCUCGCCa -3'
miRNA:   3'- gGCU-C-GUGCa-GCUGGCC------CGUGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 27851 0.66 0.500384
Target:  5'- aCGGGCgGCGUCGcUCGucGUACUCGUCg -3'
miRNA:   3'- gGCUCG-UGCAGCuGGCc-CGUGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 4495 0.67 0.49044
Target:  5'- aCG-GCACGgaggagcCGACCGGGa--UCGCUc -3'
miRNA:   3'- gGCuCGUGCa------GCUGGCCCgugAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 18147 0.67 0.49044
Target:  5'- gUCG-GCACGUaggccgGACCGGGCGg--GCCg -3'
miRNA:   3'- -GGCuCGUGCAg-----CUGGCCCGUgagCGG- -5'
26429 3' -59.2 NC_005345.2 + 30263 0.67 0.49044
Target:  5'- gCCGAGCA----GGCCGGGC--UCGUCg -3'
miRNA:   3'- -GGCUCGUgcagCUGGCCCGugAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 39412 0.67 0.49044
Target:  5'- cCCGGGaGCGUCGGCgCGGuCGCg-GCCc -3'
miRNA:   3'- -GGCUCgUGCAGCUG-GCCcGUGagCGG- -5'
26429 3' -59.2 NC_005345.2 + 36003 0.67 0.480588
Target:  5'- aCG-GCGaccaaGUCGGuCCGGGaCAUgaUCGCCa -3'
miRNA:   3'- gGCuCGUg----CAGCU-GGCCC-GUG--AGCGG- -5'
26429 3' -59.2 NC_005345.2 + 7763 0.67 0.480588
Target:  5'- gCCGcuGCACGugaUCGACacgCGGGUGCUCGaUCa -3'
miRNA:   3'- -GGCu-CGUGC---AGCUG---GCCCGUGAGC-GG- -5'
26429 3' -59.2 NC_005345.2 + 29047 0.67 0.480588
Target:  5'- uUCGAGUuucuGCGU-GGCgGcGGCggGCUCGCCg -3'
miRNA:   3'- -GGCUCG----UGCAgCUGgC-CCG--UGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 25851 0.67 0.480588
Target:  5'- aCCGAGgACaaCGGCCGGcCG-UCGCCg -3'
miRNA:   3'- -GGCUCgUGcaGCUGGCCcGUgAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 16774 0.67 0.480588
Target:  5'- gUGAGCGCacuGUcCGACaGGGUgacCUCGCCa -3'
miRNA:   3'- gGCUCGUG---CA-GCUGgCCCGu--GAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 25220 0.67 0.480588
Target:  5'- aCCGAgugcgagcucacGCACGaCGGCuCGucGGCGCUCGUg -3'
miRNA:   3'- -GGCU------------CGUGCaGCUG-GC--CCGUGAGCGg -5'
26429 3' -59.2 NC_005345.2 + 11398 0.67 0.474723
Target:  5'- gCGAGCagcucgaccucgacgACGcCGACCagccGGCGCcgCGCCg -3'
miRNA:   3'- gGCUCG---------------UGCaGCUGGc---CCGUGa-GCGG- -5'
26429 3' -59.2 NC_005345.2 + 39202 0.67 0.470834
Target:  5'- cCCGGGcCGCGgguuggCGACCgucGGGCcgaCGCCg -3'
miRNA:   3'- -GGCUC-GUGCa-----GCUGG---CCCGugaGCGG- -5'
26429 3' -59.2 NC_005345.2 + 38265 0.67 0.470834
Target:  5'- aUGAcGUGCGg-GugCGGGCACgggacgCGCCg -3'
miRNA:   3'- gGCU-CGUGCagCugGCCCGUGa-----GCGG- -5'
26429 3' -59.2 NC_005345.2 + 36291 0.67 0.470834
Target:  5'- gCGAGCcacccccacgACGUC-ACCGGuC-CUCGCCg -3'
miRNA:   3'- gGCUCG----------UGCAGcUGGCCcGuGAGCGG- -5'
26429 3' -59.2 NC_005345.2 + 10717 0.67 0.470834
Target:  5'- gCGgcAGCuCGUCGGCCGGauggccGCGCucgaugucgUCGCCg -3'
miRNA:   3'- gGC--UCGuGCAGCUGGCC------CGUG---------AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.